Protein–RNA interactions for Protein: Q8NET4

RTL9, Retrotransposon Gag-like protein 9, humanhuman

Predictions only

Length 1,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL9Q8NET4 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
RTL9Q8NET4 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC24.35■■□□□ 1.49
RTL9Q8NET4 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
RTL9Q8NET4 AC020907.5-201ENST00000624372 1936 ntBASIC24.35■■□□□ 1.49
RTL9Q8NET4 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC24.34■■□□□ 1.49
RTL9Q8NET4 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC24.34■■□□□ 1.49
RTL9Q8NET4 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
RTL9Q8NET4 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
RTL9Q8NET4 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC24.34■■□□□ 1.49
RTL9Q8NET4 ARMC10P1-201ENST00000313754 855 ntBASIC24.34■■□□□ 1.49
RTL9Q8NET4 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC24.34■■□□□ 1.49
RTL9Q8NET4 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC24.34■■□□□ 1.49
RTL9Q8NET4 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
RTL9Q8NET4 AL049597.2-201ENST00000565575 961 ntBASIC24.34■■□□□ 1.49
RTL9Q8NET4 AC005363.2-201ENST00000618631 242 ntBASIC24.34■■□□□ 1.49
RTL9Q8NET4 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC24.34■■□□□ 1.49
RTL9Q8NET4 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC24.34■■□□□ 1.49
RTL9Q8NET4 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
RTL9Q8NET4 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
RTL9Q8NET4 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC24.34■■□□□ 1.49
RTL9Q8NET4 CYP2D8P-201ENST00000433633 1490 ntBASIC24.33■■□□□ 1.49
RTL9Q8NET4 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
RTL9Q8NET4 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
RTL9Q8NET4 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
RTL9Q8NET4 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC24.33■■□□□ 1.49
RTL9Q8NET4 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC24.33■■□□□ 1.49
RTL9Q8NET4 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
RTL9Q8NET4 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
RTL9Q8NET4 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
RTL9Q8NET4 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
RTL9Q8NET4 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC24.33■■□□□ 1.49
RTL9Q8NET4 DUT-205ENST00000558813 769 ntTSL 2 BASIC24.33■■□□□ 1.49
RTL9Q8NET4 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC24.33■■□□□ 1.49
RTL9Q8NET4 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC24.33■■□□□ 1.49
RTL9Q8NET4 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
RTL9Q8NET4 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC24.33■■□□□ 1.49
RTL9Q8NET4 AP001271.2-201ENST00000624018 1556 ntBASIC24.33■■□□□ 1.49
RTL9Q8NET4 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
RTL9Q8NET4 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC24.33■■□□□ 1.48
RTL9Q8NET4 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.48
RTL9Q8NET4 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
RTL9Q8NET4 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RTL9Q8NET4 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC24.32■■□□□ 1.48
RTL9Q8NET4 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC24.32■■□□□ 1.48
RTL9Q8NET4 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
RTL9Q8NET4 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
RTL9Q8NET4 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RTL9Q8NET4 AC113347.1-201ENST00000413321 391 ntBASIC24.32■■□□□ 1.48
RTL9Q8NET4 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC24.32■■□□□ 1.48
RTL9Q8NET4 KRT18P57-201ENST00000443599 1254 ntBASIC24.32■■□□□ 1.48
RTL9Q8NET4 AC011506.1-201ENST00000474329 610 ntBASIC24.32■■□□□ 1.48
RTL9Q8NET4 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC24.32■■□□□ 1.48
RTL9Q8NET4 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
RTL9Q8NET4 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RTL9Q8NET4 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
RTL9Q8NET4 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RTL9Q8NET4 PALM-208ENST00000592155 2272 ntTSL 4 BASIC24.32■■□□□ 1.48
RTL9Q8NET4 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RTL9Q8NET4 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC24.32■■□□□ 1.48
RTL9Q8NET4 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC24.32■■□□□ 1.48
RTL9Q8NET4 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
RTL9Q8NET4 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC24.32■■□□□ 1.48
RTL9Q8NET4 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC24.32■■□□□ 1.48
RTL9Q8NET4 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RTL9Q8NET4 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
RTL9Q8NET4 RBM42-202ENST00000586618 771 ntTSL 3 BASIC24.31■■□□□ 1.48
RTL9Q8NET4 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC24.31■■□□□ 1.48
RTL9Q8NET4 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC24.31■■□□□ 1.48
RTL9Q8NET4 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
RTL9Q8NET4 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
RTL9Q8NET4 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
RTL9Q8NET4 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
RTL9Q8NET4 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC24.31■■□□□ 1.48
RTL9Q8NET4 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
RTL9Q8NET4 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC24.31■■□□□ 1.48
RTL9Q8NET4 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC24.31■■□□□ 1.48
RTL9Q8NET4 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
RTL9Q8NET4 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
RTL9Q8NET4 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC24.3■■□□□ 1.48
RTL9Q8NET4 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC24.3■■□□□ 1.48
RTL9Q8NET4 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
RTL9Q8NET4 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC24.3■■□□□ 1.48
RTL9Q8NET4 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
RTL9Q8NET4 NAPSB-206ENST00000562112 1266 ntBASIC24.3■■□□□ 1.48
RTL9Q8NET4 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC24.3■■□□□ 1.48
RTL9Q8NET4 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC24.3■■□□□ 1.48
RTL9Q8NET4 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC24.3■■□□□ 1.48
RTL9Q8NET4 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
RTL9Q8NET4 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC24.3■■□□□ 1.48
RTL9Q8NET4 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC24.3■■□□□ 1.48
RTL9Q8NET4 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC24.3■■□□□ 1.48
RTL9Q8NET4 AC131212.4-201ENST00000623606 975 ntBASIC24.3■■□□□ 1.48
RTL9Q8NET4 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
RTL9Q8NET4 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC24.3■■□□□ 1.48
RTL9Q8NET4 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC24.3■■□□□ 1.48
RTL9Q8NET4 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
RTL9Q8NET4 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC24.29■■□□□ 1.48
RTL9Q8NET4 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
RTL9Q8NET4 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
RTL9Q8NET4 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms