Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.3■□□□□ 0.68
VRK3Q8IV63 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
VRK3Q8IV63 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC19.3■□□□□ 0.68
VRK3Q8IV63 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VRK3Q8IV63 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VRK3Q8IV63 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VRK3Q8IV63 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.3■□□□□ 0.68
VRK3Q8IV63 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.3■□□□□ 0.68
VRK3Q8IV63 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
VRK3Q8IV63 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.3■□□□□ 0.68
VRK3Q8IV63 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
VRK3Q8IV63 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VRK3Q8IV63 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VRK3Q8IV63 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VRK3Q8IV63 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VRK3Q8IV63 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VRK3Q8IV63 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
VRK3Q8IV63 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VRK3Q8IV63 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VRK3Q8IV63 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.29■□□□□ 0.68
VRK3Q8IV63 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
VRK3Q8IV63 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VRK3Q8IV63 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VRK3Q8IV63 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.29■□□□□ 0.68
VRK3Q8IV63 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VRK3Q8IV63 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VRK3Q8IV63 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
VRK3Q8IV63 AC128676.1-201ENST00000454392 318 ntBASIC19.29■□□□□ 0.68
VRK3Q8IV63 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
VRK3Q8IV63 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.29■□□□□ 0.68
VRK3Q8IV63 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC19.29■□□□□ 0.68
VRK3Q8IV63 MAX-217ENST00000557277 728 ntTSL 3 BASIC19.29■□□□□ 0.68
VRK3Q8IV63 MTDHP1-201ENST00000605323 784 ntBASIC19.29■□□□□ 0.68
VRK3Q8IV63 Six3os1_6.1-201ENST00000620790 196 ntBASIC19.29■□□□□ 0.68
VRK3Q8IV63 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.29■□□□□ 0.68
VRK3Q8IV63 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
VRK3Q8IV63 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
VRK3Q8IV63 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VRK3Q8IV63 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VRK3Q8IV63 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.29■□□□□ 0.68
VRK3Q8IV63 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VRK3Q8IV63 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VRK3Q8IV63 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VRK3Q8IV63 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
VRK3Q8IV63 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
VRK3Q8IV63 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
VRK3Q8IV63 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
VRK3Q8IV63 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VRK3Q8IV63 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
VRK3Q8IV63 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
VRK3Q8IV63 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VRK3Q8IV63 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VRK3Q8IV63 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VRK3Q8IV63 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VRK3Q8IV63 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VRK3Q8IV63 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VRK3Q8IV63 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VRK3Q8IV63 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VRK3Q8IV63 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
VRK3Q8IV63 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VRK3Q8IV63 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VRK3Q8IV63 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
VRK3Q8IV63 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
VRK3Q8IV63 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VRK3Q8IV63 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VRK3Q8IV63 TREX1-205ENST00000625293 1783 ntBASIC19.27■□□□□ 0.68
VRK3Q8IV63 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.27■□□□□ 0.68
VRK3Q8IV63 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VRK3Q8IV63 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VRK3Q8IV63 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC19.27■□□□□ 0.68
VRK3Q8IV63 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC19.27■□□□□ 0.68
VRK3Q8IV63 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC19.27■□□□□ 0.68
VRK3Q8IV63 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VRK3Q8IV63 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
VRK3Q8IV63 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC19.27■□□□□ 0.68
VRK3Q8IV63 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC19.27■□□□□ 0.68
VRK3Q8IV63 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.27■□□□□ 0.68
VRK3Q8IV63 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.27■□□□□ 0.68
VRK3Q8IV63 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VRK3Q8IV63 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VRK3Q8IV63 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
VRK3Q8IV63 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
VRK3Q8IV63 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
VRK3Q8IV63 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VRK3Q8IV63 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.26■□□□□ 0.67
VRK3Q8IV63 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VRK3Q8IV63 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
VRK3Q8IV63 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.26■□□□□ 0.67
VRK3Q8IV63 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC19.26■□□□□ 0.67
VRK3Q8IV63 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.26■□□□□ 0.67
VRK3Q8IV63 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
VRK3Q8IV63 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VRK3Q8IV63 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VRK3Q8IV63 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VRK3Q8IV63 FAM201B-201ENST00000458407 597 ntBASIC19.26■□□□□ 0.67
VRK3Q8IV63 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.26■□□□□ 0.67
VRK3Q8IV63 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC19.26■□□□□ 0.67
VRK3Q8IV63 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC19.26■□□□□ 0.67
VRK3Q8IV63 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC19.26■□□□□ 0.67
VRK3Q8IV63 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms