Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00643Q86TS7 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00643Q86TS7 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00643Q86TS7 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00643Q86TS7 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LINC00643Q86TS7 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00643Q86TS7 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC12.35□□□□□ -0.43
LINC00643Q86TS7 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00643Q86TS7 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00643Q86TS7 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00643Q86TS7 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00643Q86TS7 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00643Q86TS7 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC12.35□□□□□ -0.43
LINC00643Q86TS7 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00643Q86TS7 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00643Q86TS7 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
LINC00643Q86TS7 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00643Q86TS7 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00643Q86TS7 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
LINC00643Q86TS7 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00643Q86TS7 ECEL1P2-201ENST00000461596 1295 ntBASIC12.35□□□□□ -0.43
LINC00643Q86TS7 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC12.35□□□□□ -0.43
LINC00643Q86TS7 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC12.35□□□□□ -0.43
LINC00643Q86TS7 STK25-204ENST00000405585 1643 ntTSL 2 BASIC12.35□□□□□ -0.43
LINC00643Q86TS7 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00643Q86TS7 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00643Q86TS7 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00643Q86TS7 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00643Q86TS7 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00643Q86TS7 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00643Q86TS7 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC12.35□□□□□ -0.43
LINC00643Q86TS7 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00643Q86TS7 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC12.35□□□□□ -0.43
LINC00643Q86TS7 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC12.35□□□□□ -0.43
LINC00643Q86TS7 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
LINC00643Q86TS7 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 AC018695.7-201ENST00000624587 2492 ntBASIC12.34□□□□□ -0.43
LINC00643Q86TS7 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 FP325331.1-202ENST00000623531 1380 ntBASIC12.34□□□□□ -0.43
LINC00643Q86TS7 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00643Q86TS7 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.43
LINC00643Q86TS7 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC12.33□□□□□ -0.43
LINC00643Q86TS7 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC12.33□□□□□ -0.44
LINC00643Q86TS7 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC12.33□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms