Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CSPG4Q6UVK1 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CSPG4Q6UVK1 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CSPG4Q6UVK1 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CSPG4Q6UVK1 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC16.3■□□□□ 0.2
CSPG4Q6UVK1 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC16.3■□□□□ 0.2
CSPG4Q6UVK1 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
CSPG4Q6UVK1 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC16.29■□□□□ 0.2
CSPG4Q6UVK1 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.29■□□□□ 0.2
CSPG4Q6UVK1 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CSPG4Q6UVK1 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC16.29■□□□□ 0.2
CSPG4Q6UVK1 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC16.29■□□□□ 0.2
CSPG4Q6UVK1 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC16.29■□□□□ 0.2
CSPG4Q6UVK1 AL691432.3-201ENST00000621860 400 ntBASIC16.29■□□□□ 0.2
CSPG4Q6UVK1 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CSPG4Q6UVK1 PARN-205ENST00000539279 1557 ntTSL 2 BASIC16.29■□□□□ 0.2
CSPG4Q6UVK1 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
CSPG4Q6UVK1 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CSPG4Q6UVK1 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC16.29■□□□□ 0.2
CSPG4Q6UVK1 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CSPG4Q6UVK1 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CSPG4Q6UVK1 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CSPG4Q6UVK1 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CSPG4Q6UVK1 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CSPG4Q6UVK1 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC16.29■□□□□ 0.2
CSPG4Q6UVK1 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC16.29■□□□□ 0.2
CSPG4Q6UVK1 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CSPG4Q6UVK1 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CSPG4Q6UVK1 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC16.29■□□□□ 0.2
CSPG4Q6UVK1 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
CSPG4Q6UVK1 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC16.29■□□□□ 0.2
CSPG4Q6UVK1 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CSPG4Q6UVK1 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CSPG4Q6UVK1 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC16.29■□□□□ 0.2
CSPG4Q6UVK1 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC16.29■□□□□ 0.2
CSPG4Q6UVK1 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CSPG4Q6UVK1 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CSPG4Q6UVK1 STK25-204ENST00000405585 1643 ntTSL 2 BASIC16.29■□□□□ 0.2
CSPG4Q6UVK1 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC16.28■□□□□ 0.2
CSPG4Q6UVK1 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CSPG4Q6UVK1 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CSPG4Q6UVK1 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC16.28■□□□□ 0.2
CSPG4Q6UVK1 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC16.28■□□□□ 0.2
CSPG4Q6UVK1 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CSPG4Q6UVK1 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC16.28■□□□□ 0.2
CSPG4Q6UVK1 CD81-212ENST00000526072 1172 ntTSL 5 BASIC16.28■□□□□ 0.2
CSPG4Q6UVK1 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC16.28■□□□□ 0.2
CSPG4Q6UVK1 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CSPG4Q6UVK1 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.28■□□□□ 0.2
CSPG4Q6UVK1 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CSPG4Q6UVK1 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CSPG4Q6UVK1 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CSPG4Q6UVK1 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
CSPG4Q6UVK1 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CSPG4Q6UVK1 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CSPG4Q6UVK1 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC16.27■□□□□ 0.2
CSPG4Q6UVK1 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CSPG4Q6UVK1 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CSPG4Q6UVK1 LSR-203ENST00000360798 1963 ntTSL 2 BASIC16.27■□□□□ 0.2
CSPG4Q6UVK1 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
CSPG4Q6UVK1 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CSPG4Q6UVK1 MIR2861-201ENST00000636310 90 ntBASIC16.27■□□□□ 0.2
CSPG4Q6UVK1 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CSPG4Q6UVK1 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
CSPG4Q6UVK1 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CSPG4Q6UVK1 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC16.27■□□□□ 0.19
CSPG4Q6UVK1 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CSPG4Q6UVK1 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CSPG4Q6UVK1 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
CSPG4Q6UVK1 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CSPG4Q6UVK1 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
CSPG4Q6UVK1 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC16.27■□□□□ 0.19
CSPG4Q6UVK1 AC091390.4-202ENST00000476426 537 ntBASIC16.27■□□□□ 0.19
CSPG4Q6UVK1 C1QL1P1-201ENST00000568105 661 ntBASIC16.27■□□□□ 0.19
CSPG4Q6UVK1 GPX4-207ENST00000589115 812 ntTSL 2 BASIC16.27■□□□□ 0.19
CSPG4Q6UVK1 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC16.27■□□□□ 0.19
CSPG4Q6UVK1 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CSPG4Q6UVK1 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC16.27■□□□□ 0.19
CSPG4Q6UVK1 AC130371.2-201ENST00000619443 611 ntBASIC16.27■□□□□ 0.19
CSPG4Q6UVK1 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC16.27■□□□□ 0.19
CSPG4Q6UVK1 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CSPG4Q6UVK1 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC16.26■□□□□ 0.19
CSPG4Q6UVK1 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CSPG4Q6UVK1 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CSPG4Q6UVK1 KRT8P10-201ENST00000450021 1447 ntBASIC16.26■□□□□ 0.19
CSPG4Q6UVK1 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
CSPG4Q6UVK1 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CSPG4Q6UVK1 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CSPG4Q6UVK1 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CSPG4Q6UVK1 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CSPG4Q6UVK1 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
CSPG4Q6UVK1 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16.26■□□□□ 0.19
CSPG4Q6UVK1 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC16.26■□□□□ 0.19
CSPG4Q6UVK1 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC16.26■□□□□ 0.19
CSPG4Q6UVK1 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
CSPG4Q6UVK1 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CSPG4Q6UVK1 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC16.26■□□□□ 0.19
CSPG4Q6UVK1 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
CSPG4Q6UVK1 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CSPG4Q6UVK1 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms