Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CX3CL1P78423 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
CX3CL1P78423 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
CX3CL1P78423 MOK-233ENST00000524214 1539 ntTSL 2 BASIC15.86■□□□□ 0.13
CX3CL1P78423 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CX3CL1P78423 GATS-209ENST00000454084 1030 ntTSL 3 BASIC15.86■□□□□ 0.13
CX3CL1P78423 RGMA-211ENST00000557420 989 ntTSL 3 BASIC15.86■□□□□ 0.13
CX3CL1P78423 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CX3CL1P78423 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
CX3CL1P78423 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC15.86■□□□□ 0.13
CX3CL1P78423 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
CX3CL1P78423 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CX3CL1P78423 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
CX3CL1P78423 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
CX3CL1P78423 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
CX3CL1P78423 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
CX3CL1P78423 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CX3CL1P78423 KRT16P6-202ENST00000425692 1426 ntBASIC15.85■□□□□ 0.13
CX3CL1P78423 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CX3CL1P78423 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CX3CL1P78423 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
CX3CL1P78423 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CX3CL1P78423 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC15.85■□□□□ 0.13
CX3CL1P78423 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CX3CL1P78423 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
CX3CL1P78423 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CX3CL1P78423 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
CX3CL1P78423 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CX3CL1P78423 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
CX3CL1P78423 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
CX3CL1P78423 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CX3CL1P78423 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CX3CL1P78423 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC15.85■□□□□ 0.13
CX3CL1P78423 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC15.85■□□□□ 0.13
CX3CL1P78423 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CX3CL1P78423 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC15.85■□□□□ 0.13
CX3CL1P78423 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC15.85■□□□□ 0.13
CX3CL1P78423 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC15.85■□□□□ 0.13
CX3CL1P78423 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
CX3CL1P78423 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
CX3CL1P78423 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CX3CL1P78423 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CX3CL1P78423 CD37-204ENST00000535669 1674 ntTSL 2 BASIC15.85■□□□□ 0.13
CX3CL1P78423 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
CX3CL1P78423 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CX3CL1P78423 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CX3CL1P78423 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CX3CL1P78423 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC15.85■□□□□ 0.13
CX3CL1P78423 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
CX3CL1P78423 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC15.85■□□□□ 0.13
CX3CL1P78423 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC15.85■□□□□ 0.13
CX3CL1P78423 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CX3CL1P78423 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC15.84■□□□□ 0.13
CX3CL1P78423 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC15.84■□□□□ 0.13
CX3CL1P78423 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
CX3CL1P78423 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CX3CL1P78423 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
CX3CL1P78423 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CX3CL1P78423 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CX3CL1P78423 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CX3CL1P78423 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC15.84■□□□□ 0.13
CX3CL1P78423 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC15.84■□□□□ 0.13
CX3CL1P78423 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC15.84■□□□□ 0.13
CX3CL1P78423 AC083880.1-201ENST00000608266 535 ntBASIC15.84■□□□□ 0.13
CX3CL1P78423 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
CX3CL1P78423 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
CX3CL1P78423 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
CX3CL1P78423 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC15.84■□□□□ 0.13
CX3CL1P78423 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC15.84■□□□□ 0.13
CX3CL1P78423 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC15.84■□□□□ 0.13
CX3CL1P78423 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
CX3CL1P78423 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
CX3CL1P78423 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
CX3CL1P78423 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.13
CX3CL1P78423 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.13
CX3CL1P78423 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.13
CX3CL1P78423 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
CX3CL1P78423 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.13
CX3CL1P78423 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CX3CL1P78423 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CX3CL1P78423 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CX3CL1P78423 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
CX3CL1P78423 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
CX3CL1P78423 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CX3CL1P78423 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CX3CL1P78423 AL390719.1-204ENST00000412397 1219 ntBASIC15.83■□□□□ 0.12
CX3CL1P78423 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
CX3CL1P78423 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CX3CL1P78423 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC15.83■□□□□ 0.12
CX3CL1P78423 EMC9-206ENST00000560403 872 ntTSL 2 BASIC15.83■□□□□ 0.12
CX3CL1P78423 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
CX3CL1P78423 HLA-B-256ENST00000639848 1089 ntBASIC15.83■□□□□ 0.12
CX3CL1P78423 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CX3CL1P78423 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CX3CL1P78423 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CX3CL1P78423 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC15.83■□□□□ 0.12
CX3CL1P78423 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC15.83■□□□□ 0.12
CX3CL1P78423 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CX3CL1P78423 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CX3CL1P78423 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC15.83■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms