Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
HOXA1P49639 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
HOXA1P49639 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA1P49639 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA1P49639 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
HOXA1P49639 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
HOXA1P49639 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA1P49639 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
HOXA1P49639 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA1P49639 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
HOXA1P49639 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
HOXA1P49639 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA1P49639 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC16.3■□□□□ 0.2
HOXA1P49639 PTPA-214ENST00000423100 988 ntTSL 2 BASIC16.3■□□□□ 0.2
HOXA1P49639 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA1P49639 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC16.3■□□□□ 0.2
HOXA1P49639 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA1P49639 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA1P49639 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA1P49639 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
HOXA1P49639 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA1P49639 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA1P49639 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA1P49639 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC16.3■□□□□ 0.2
HOXA1P49639 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA1P49639 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA1P49639 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA1P49639 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA1P49639 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
HOXA1P49639 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA1P49639 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
HOXA1P49639 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC16.3■□□□□ 0.2
HOXA1P49639 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA1P49639 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXA1P49639 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXA1P49639 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HOXA1P49639 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
HOXA1P49639 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HOXA1P49639 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
HOXA1P49639 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HOXA1P49639 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC16.29■□□□□ 0.2
HOXA1P49639 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXA1P49639 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HOXA1P49639 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC16.29■□□□□ 0.2
HOXA1P49639 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HOXA1P49639 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HOXA1P49639 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC16.29■□□□□ 0.2
HOXA1P49639 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
HOXA1P49639 RALB-208ENST00000631312 311 ntTSL 5 BASIC16.29■□□□□ 0.2
HOXA1P49639 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC16.29■□□□□ 0.2
HOXA1P49639 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXA1P49639 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXA1P49639 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC16.29■□□□□ 0.2
HOXA1P49639 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HOXA1P49639 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
HOXA1P49639 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXA1P49639 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
HOXA1P49639 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC16.28■□□□□ 0.2
HOXA1P49639 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXA1P49639 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC16.28■□□□□ 0.2
HOXA1P49639 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC16.28■□□□□ 0.2
HOXA1P49639 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HOXA1P49639 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXA1P49639 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
HOXA1P49639 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXA1P49639 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC16.28■□□□□ 0.2
HOXA1P49639 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.28■□□□□ 0.2
HOXA1P49639 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HOXA1P49639 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC16.28■□□□□ 0.2
HOXA1P49639 NAA20-201ENST00000310450 920 ntTSL 2 BASIC16.28■□□□□ 0.2
HOXA1P49639 AC010141.2-201ENST00000452426 721 ntBASIC16.28■□□□□ 0.2
HOXA1P49639 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC16.28■□□□□ 0.2
HOXA1P49639 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC16.28■□□□□ 0.2
HOXA1P49639 AL031432.3-201ENST00000607698 485 ntBASIC16.28■□□□□ 0.2
HOXA1P49639 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC16.28■□□□□ 0.2
HOXA1P49639 MIR2861-201ENST00000636310 90 ntBASIC16.28■□□□□ 0.2
HOXA1P49639 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HOXA1P49639 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
HOXA1P49639 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC16.28■□□□□ 0.2
HOXA1P49639 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXA1P49639 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXA1P49639 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
HOXA1P49639 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC16.28■□□□□ 0.2
HOXA1P49639 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC16.28■□□□□ 0.2
HOXA1P49639 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXA1P49639 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXA1P49639 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC16.28■□□□□ 0.2
HOXA1P49639 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC16.28■□□□□ 0.2
HOXA1P49639 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXA1P49639 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXA1P49639 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC16.28■□□□□ 0.2
HOXA1P49639 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXA1P49639 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXA1P49639 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXA1P49639 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC16.27■□□□□ 0.2
HOXA1P49639 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HOXA1P49639 AC099398.1-201ENST00000567919 2776 ntBASIC16.27■□□□□ 0.2
HOXA1P49639 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HOXA1P49639 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.27■□□□□ 0.2
HOXA1P49639 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms