Protein–RNA interactions for Protein: P29350

PTPN6, Tyrosine-protein phosphatase non-receptor type 6, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6P29350 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN6P29350 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN6P29350 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN6P29350 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN6P29350 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC18.7■□□□□ 0.58
PTPN6P29350 AL355472.2-201ENST00000422958 438 ntBASIC18.7■□□□□ 0.58
PTPN6P29350 APTR-205ENST00000447009 902 ntTSL 2 BASIC18.7■□□□□ 0.58
PTPN6P29350 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN6P29350 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC18.7■□□□□ 0.58
PTPN6P29350 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN6P29350 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
PTPN6P29350 CYP2T3P-201ENST00000601990 817 ntBASIC18.7■□□□□ 0.58
PTPN6P29350 AC133041.1-202ENST00000642053 222 ntBASIC18.7■□□□□ 0.58
PTPN6P29350 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC18.7■□□□□ 0.58
PTPN6P29350 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN6P29350 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN6P29350 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN6P29350 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN6P29350 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN6P29350 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTPN6P29350 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTPN6P29350 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTPN6P29350 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.69■□□□□ 0.58
PTPN6P29350 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTPN6P29350 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTPN6P29350 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.69■□□□□ 0.58
PTPN6P29350 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTPN6P29350 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTPN6P29350 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PTPN6P29350 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PTPN6P29350 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
PTPN6P29350 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTPN6P29350 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.69■□□□□ 0.58
PTPN6P29350 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC18.69■□□□□ 0.58
PTPN6P29350 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTPN6P29350 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTPN6P29350 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTPN6P29350 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
PTPN6P29350 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
PTPN6P29350 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
PTPN6P29350 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.69■□□□□ 0.58
PTPN6P29350 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN6P29350 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN6P29350 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN6P29350 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.68■□□□□ 0.58
PTPN6P29350 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
PTPN6P29350 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN6P29350 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN6P29350 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN6P29350 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN6P29350 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN6P29350 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN6P29350 PPP1R14BP2-201ENST00000426284 444 ntBASIC18.68■□□□□ 0.58
PTPN6P29350 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC18.68■□□□□ 0.58
PTPN6P29350 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC18.68■□□□□ 0.58
PTPN6P29350 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.68■□□□□ 0.58
PTPN6P29350 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC18.68■□□□□ 0.58
PTPN6P29350 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC18.68■□□□□ 0.58
PTPN6P29350 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.68■□□□□ 0.58
PTPN6P29350 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.68■□□□□ 0.58
PTPN6P29350 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
PTPN6P29350 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN6P29350 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN6P29350 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN6P29350 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
PTPN6P29350 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.68■□□□□ 0.58
PTPN6P29350 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
PTPN6P29350 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN6P29350 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN6P29350 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.67■□□□□ 0.58
PTPN6P29350 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.67■□□□□ 0.58
PTPN6P29350 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN6P29350 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.67■□□□□ 0.58
PTPN6P29350 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC18.67■□□□□ 0.58
PTPN6P29350 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN6P29350 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
PTPN6P29350 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.67■□□□□ 0.58
PTPN6P29350 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN6P29350 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN6P29350 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC18.67■□□□□ 0.58
PTPN6P29350 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.67■□□□□ 0.58
PTPN6P29350 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC18.67■□□□□ 0.58
PTPN6P29350 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN6P29350 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC18.67■□□□□ 0.58
PTPN6P29350 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC18.67■□□□□ 0.58
PTPN6P29350 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC18.67■□□□□ 0.58
PTPN6P29350 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.67■□□□□ 0.58
PTPN6P29350 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN6P29350 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN6P29350 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.67■□□□□ 0.58
PTPN6P29350 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN6P29350 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN6P29350 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.66■□□□□ 0.58
PTPN6P29350 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.66■□□□□ 0.58
PTPN6P29350 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN6P29350 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
PTPN6P29350 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN6P29350 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN6P29350 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN6P29350 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms