Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC19.62■□□□□ 0.73
MSH3P20585 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.62■□□□□ 0.73
MSH3P20585 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
MSH3P20585 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
MSH3P20585 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSH3P20585 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC19.62■□□□□ 0.73
MSH3P20585 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC19.62■□□□□ 0.73
MSH3P20585 MAX-217ENST00000557277 728 ntTSL 3 BASIC19.62■□□□□ 0.73
MSH3P20585 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19.62■□□□□ 0.73
MSH3P20585 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
MSH3P20585 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSH3P20585 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSH3P20585 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
MSH3P20585 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSH3P20585 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSH3P20585 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSH3P20585 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
MSH3P20585 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
MSH3P20585 AL691432.2-201ENST00000607222 2038 ntBASIC19.61■□□□□ 0.73
MSH3P20585 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MSH3P20585 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.61■□□□□ 0.73
MSH3P20585 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MSH3P20585 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.61■□□□□ 0.73
MSH3P20585 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MSH3P20585 AC112907.3-201ENST00000577781 2400 ntBASIC19.61■□□□□ 0.73
MSH3P20585 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.61■□□□□ 0.73
MSH3P20585 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
MSH3P20585 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC19.61■□□□□ 0.73
MSH3P20585 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC19.61■□□□□ 0.73
MSH3P20585 THEM4-205ENST00000489410 643 ntTSL 2 BASIC19.61■□□□□ 0.73
MSH3P20585 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
MSH3P20585 AL121906.2-201ENST00000621597 723 ntBASIC19.61■□□□□ 0.73
MSH3P20585 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
MSH3P20585 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
MSH3P20585 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.61■□□□□ 0.73
MSH3P20585 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.61■□□□□ 0.73
MSH3P20585 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC19.6■□□□□ 0.73
MSH3P20585 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
MSH3P20585 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MSH3P20585 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
MSH3P20585 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.6■□□□□ 0.73
MSH3P20585 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
MSH3P20585 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MSH3P20585 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
MSH3P20585 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
MSH3P20585 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC19.6■□□□□ 0.73
MSH3P20585 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
MSH3P20585 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
MSH3P20585 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC19.6■□□□□ 0.73
MSH3P20585 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
MSH3P20585 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.6■□□□□ 0.73
MSH3P20585 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MSH3P20585 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
MSH3P20585 TCF3P1-201ENST00000423021 1937 ntBASIC19.6■□□□□ 0.73
MSH3P20585 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSH3P20585 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
MSH3P20585 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSH3P20585 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSH3P20585 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSH3P20585 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSH3P20585 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC19.59■□□□□ 0.73
MSH3P20585 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSH3P20585 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC19.59■□□□□ 0.73
MSH3P20585 IRX5-204ENST00000560154 879 ntTSL 5 BASIC19.59■□□□□ 0.73
MSH3P20585 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC19.59■□□□□ 0.73
MSH3P20585 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
MSH3P20585 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSH3P20585 AC069544.1-201ENST00000609399 999 ntBASIC19.59■□□□□ 0.73
MSH3P20585 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
MSH3P20585 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
MSH3P20585 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSH3P20585 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSH3P20585 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
MSH3P20585 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSH3P20585 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.59■□□□□ 0.73
MSH3P20585 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSH3P20585 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MSH3P20585 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
MSH3P20585 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
MSH3P20585 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.59■□□□□ 0.73
MSH3P20585 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
MSH3P20585 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
MSH3P20585 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
MSH3P20585 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
MSH3P20585 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC19.58■□□□□ 0.73
MSH3P20585 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
MSH3P20585 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.73
MSH3P20585 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
MSH3P20585 KRT18P29-201ENST00000397031 1267 ntBASIC19.58■□□□□ 0.72
MSH3P20585 AC128676.1-201ENST00000454392 318 ntBASIC19.58■□□□□ 0.72
MSH3P20585 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
MSH3P20585 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC19.58■□□□□ 0.72
MSH3P20585 PRKY-204ENST00000533551 1019 ntBASIC19.58■□□□□ 0.72
MSH3P20585 AL121829.2-201ENST00000620908 328 ntBASIC19.58■□□□□ 0.72
MSH3P20585 AC073648.6-201ENST00000641589 218 ntBASIC19.58■□□□□ 0.72
MSH3P20585 AC018553.1-201ENST00000616682 1458 ntBASIC19.58■□□□□ 0.72
MSH3P20585 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
MSH3P20585 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
MSH3P20585 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
MSH3P20585 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 11.8 ms