Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 SNRPD2-207ENST00000588599 805 ntTSL 3 BASIC15.7■□□□□ 0.19e-21■■■□□ 15.3
YBX3P16989 PCNP-202ENST00000460231 2165 ntTSL 1 (best)17■□□□□ 0.312e-8■■■□□ 15.3
YBX3P16989 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.32e-8■■■□□ 15.3
YBX3P16989 PCNP-204ENST00000469941 2028 ntTSL 1 (best) BASIC14.69□□□□□ -0.062e-8■■■□□ 15.3
YBX3P16989 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.09■□□□□ 0.331e-8■■■□□ 15.3
YBX3P16989 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC15.71■□□□□ 0.11e-8■■■□□ 15.3
YBX3P16989 RRM2-212ENST00000615152 3434 ntTSL 1 (best) BASIC11.24□□□□□ -0.611e-8■■■□□ 15.3
YBX3P16989 RRM2-213ENST00000641198 3431 ntAPPRIS P1 BASIC9.52□□□□□ -0.891e-8■■■□□ 15.3
YBX3P16989 RRM2-201ENST00000304567 3271 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.031e-8■■■□□ 15.3
YBX3P16989 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.548e-8■■■□□ 15.3
YBX3P16989 IQGAP2-217ENST00000514350 2617 ntTSL 1 (best)8.61□□□□□ -1.038e-8■■■□□ 15.3
YBX3P16989 IQGAP2-208ENST00000504815 596 ntTSL 38.09□□□□□ -1.118e-8■■■□□ 15.3
YBX3P16989 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4□□□□□ -1.778e-8■■■□□ 15.3
YBX3P16989 IQGAP2-209ENST00000505766 4255 ntTSL 23.87□□□□□ -1.798e-8■■■□□ 15.3
YBX3P16989 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.91e-6■■■□□ 15.3
YBX3P16989 GSS-202ENST00000451957 1092 ntTSL 1 (best) BASIC17.77■□□□□ 0.441e-6■■■□□ 15.3
YBX3P16989 SF3B1-208ENST00000470268 2003 ntTSL 25.75□□□□□ -1.491e-11■■■□□ 15.3
YBX3P16989 RAB4A-202ENST00000473894 708 ntTSL 322.03■■□□□ 1.122e-6■■■□□ 15.3
YBX3P16989 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.612e-6■■■□□ 15.3
YBX3P16989 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.81■□□□□ 0.62e-6■■■□□ 15.3
YBX3P16989 ABT1-201ENST00000274849 2949 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.772e-6■■■□□ 15.3
YBX3P16989 DYNLT1-201ENST00000367085 774 ntTSL 2 BASIC18■□□□□ 0.473e-10■■■□□ 15.3
YBX3P16989 PRRC2A-208ENST00000469577 918 ntTSL 519.97■□□□□ 0.793e-11■■■□□ 15.3
YBX3P16989 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.379e-7■■■□□ 15.3
YBX3P16989 MED15-225ENST00000477824 571 ntTSL 527.35■■□□□ 1.972e-12■■■□□ 15.3
YBX3P16989 MED15-210ENST00000432052 598 ntTSL 427.31■■□□□ 1.962e-12■■■□□ 15.3
YBX3P16989 MED15-215ENST00000444094 551 ntTSL 425.74■■□□□ 1.712e-12■■■□□ 15.3
YBX3P16989 MED15-218ENST00000451058 418 ntTSL 325.27■■□□□ 1.642e-12■■■□□ 15.3
YBX3P16989 MED15-205ENST00000414658 717 ntTSL 324.4■■□□□ 1.52e-12■■■□□ 15.3
YBX3P16989 MED15-227ENST00000486656 577 ntTSL 424.4■■□□□ 1.52e-12■■■□□ 15.3
YBX3P16989 MED15-221ENST00000473028 556 ntTSL 423.05■■□□□ 1.282e-12■■■□□ 15.3
YBX3P16989 MED15-216ENST00000445189 596 ntTSL 422.91■■□□□ 1.262e-12■■■□□ 15.3
YBX3P16989 MED15-214ENST00000441501 840 ntTSL 322.61■■□□□ 1.212e-12■■■□□ 15.3
YBX3P16989 MED15-217ENST00000445987 590 ntTSL 421.55■■□□□ 1.042e-12■■■□□ 15.3
YBX3P16989 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.112e-12■■■□□ 15.3
YBX3P16989 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC15.57■□□□□ 0.082e-12■■■□□ 15.3
YBX3P16989 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC14.78□□□□□ -0.042e-12■■■□□ 15.3
YBX3P16989 MED15-211ENST00000433831 3267 ntTSL 514.46□□□□□ -0.12e-12■■■□□ 15.3
YBX3P16989 MED15-201ENST00000263205 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.262e-12■■■□□ 15.3
YBX3P16989 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC25.45■■□□□ 1.665e-13■■■□□ 15.3
YBX3P16989 ELOB-205ENST00000572954 331 ntTSL 2 BASIC15.18■□□□□ 0.025e-13■■■□□ 15.3
YBX3P16989 ELOB-203ENST00000409906 991 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.175e-13■■■□□ 15.3
YBX3P16989 ELOB-201ENST00000262306 582 ntTSL 2 BASIC11.93□□□□□ -0.55e-13■■■□□ 15.3
YBX3P16989 ELOB-204ENST00000494946 472 ntTSL 211.24□□□□□ -0.615e-13■■■□□ 15.3
YBX3P16989 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC18.39■□□□□ 0.538e-18■■■□□ 15.3
YBX3P16989 LY6E-205ENST00000519611 635 ntTSL 3 BASIC26.05■■□□□ 1.761e-7■■■□□ 15.3
YBX3P16989 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC26.05■■□□□ 1.761e-7■■■□□ 15.3
YBX3P16989 LY6E-213ENST00000522528 606 ntTSL 3 BASIC24.38■■□□□ 1.491e-7■■■□□ 15.3
YBX3P16989 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC24.04■■□□□ 1.441e-7■■■□□ 15.3
YBX3P16989 LY6E-208ENST00000520531 490 ntTSL 2 BASIC19.52■□□□□ 0.721e-7■■■□□ 15.3
YBX3P16989 GPBP1L1-202ENST00000355105 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.472e-8■■■□□ 15.3
YBX3P16989 GPBP1L1-201ENST00000290795 3599 ntAPPRIS P1 TSL 5 BASIC8.58□□□□□ -1.042e-8■■■□□ 15.3
YBX3P16989 NCL-201ENST00000322723 4034 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.381e-6■■■□□ 15.3
YBX3P16989 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.526e-6■■■□□ 15.3
YBX3P16989 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.656e-6■■■□□ 15.3
YBX3P16989 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.716e-6■■■□□ 15.3
YBX3P16989 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.866e-6■■■□□ 15.3
YBX3P16989 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.165e-6■■■□□ 15.3
YBX3P16989 DHX33-205ENST00000575153 2416 ntTSL 1 (best)12.09□□□□□ -0.473e-6■■■□□ 15.3
YBX3P16989 CEP192-214ENST00000589596 3793 ntAPPRIS ALT2 TSL 27.09□□□□□ -1.288e-11■■■□□ 15.3
YBX3P16989 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.271e-43■■■□□ 15.3
YBX3P16989 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.841e-43■■■□□ 15.3
YBX3P16989 RPLP2-208ENST00000532004 353 ntTSL 319.92■□□□□ 0.781e-43■■■□□ 15.3
YBX3P16989 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.011e-8■■■□□ 15.3
YBX3P16989 SLC2A3-202ENST00000469295 1030 ntTSL 210.21□□□□□ -0.778e-17■■■□□ 15.3
YBX3P16989 NT5C3B-204ENST00000445655 922 ntTSL 228.51■■■□□ 2.151e-6■■■□□ 15.3
YBX3P16989 NT5C3B-216ENST00000523903 1534 ntTSL 1 (best)28.33■■■□□ 2.131e-6■■■□□ 15.3
YBX3P16989 NT5C3B-201ENST00000393910 1253 ntTSL 228.08■■■□□ 2.091e-6■■■□□ 15.3
YBX3P16989 NT5C3B-209ENST00000476921 1081 ntTSL 328.08■■■□□ 2.091e-6■■■□□ 15.3
YBX3P16989 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC26.97■■□□□ 1.911e-6■■■□□ 15.3
YBX3P16989 NT5C3B-207ENST00000470690 1729 ntTSL 526.34■■□□□ 1.811e-6■■■□□ 15.3
YBX3P16989 NT5C3B-206ENST00000469698 1573 ntTSL 324.71■■□□□ 1.551e-6■■■□□ 15.3
YBX3P16989 NT5C3B-202ENST00000415460 730 ntTSL 524.34■■□□□ 1.491e-6■■■□□ 15.3
YBX3P16989 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC23.62■■□□□ 1.371e-6■■■□□ 15.3
YBX3P16989 ARV1-205ENST00000459891 1009 ntTSL 58.74□□□□□ -1.012e-7■■■□□ 15.3
YBX3P16989 MCRIP2-202ENST00000474840 702 ntTSL 1 (best)34.86■■■■□ 3.173e-7■■■□□ 15.3
YBX3P16989 MCRIP2-203ENST00000491999 1050 ntTSL 528.4■■■□□ 2.143e-7■■■□□ 15.3
YBX3P16989 MCRIP2-210ENST00000620462 1594 ntTSL 523.5■■□□□ 1.353e-7■■■□□ 15.3
YBX3P16989 MCRIP2-206ENST00000615744 1379 ntTSL 323.28■■□□□ 1.323e-7■■■□□ 15.3
YBX3P16989 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.313e-7■■■□□ 15.3
YBX3P16989 MCRIP2-204ENST00000575894 1728 nt20.98■□□□□ 0.953e-7■■■□□ 15.3
YBX3P16989 MCRIP2-205ENST00000611328 628 ntTSL 319.98■□□□□ 0.793e-7■■■□□ 15.3
YBX3P16989 MCRIP2-209ENST00000619674 2306 ntTSL 218.38■□□□□ 0.533e-7■■■□□ 15.3
YBX3P16989 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.64■□□□□ 0.731e-6■■■□□ 15.3
YBX3P16989 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.37■□□□□ 0.531e-6■■■□□ 15.3
YBX3P16989 RGS10-205ENST00000473563 285 ntTSL 36.88□□□□□ -1.313e-10■■■□□ 15.3
YBX3P16989 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC35.5■■■■□ 3.271e-6■■■□□ 15.3
YBX3P16989 RNF138-209ENST00000585103 608 ntTSL 423.36■■□□□ 1.335e-7■■■□□ 15.3
YBX3P16989 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC19.06■□□□□ 0.645e-7■■■□□ 15.3
YBX3P16989 RNF138-205ENST00000578914 613 ntTSL 418.63■□□□□ 0.575e-7■■■□□ 15.3
YBX3P16989 RNF138-207ENST00000580519 575 ntTSL 418.39■□□□□ 0.535e-7■■■□□ 15.3
YBX3P16989 SKP1-207ENST00000520417 610 ntTSL 37.6□□□□□ -1.192e-12■■■□□ 15.2
YBX3P16989 AAGAB-207ENST00000561452 2251 ntTSL 5 BASIC14.48□□□□□ -0.092e-8■■■□□ 15.2
YBX3P16989 AAGAB-201ENST00000261880 2841 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.362e-8■■■□□ 15.2
YBX3P16989 AAGAB-202ENST00000538028 1777 ntTSL 28.78□□□□□ -12e-8■■■□□ 15.2
YBX3P16989 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC18.43■□□□□ 0.542e-8■■■□□ 15.2
YBX3P16989 TXNDC5-205ENST00000475802 582 ntTSL 214.53□□□□□ -0.082e-8■■■□□ 15.2
YBX3P16989 RPL34-206ENST00000504231 629 ntTSL 1 (best)10.87□□□□□ -0.678e-87■■■□□ 15.2
YBX3P16989 DDI2-201ENST00000320153 2076 ntTSL 212.22□□□□□ -0.452e-10■■■□□ 15.2
YBX3P16989 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.2■□□□□ 0.345e-7■■■□□ 15.2
Retrieved 100 of 29,075 protein–RNA pairs in 345.9 ms