RNA–Protein interactions for RNA: ENST00000520417.1

SKP1-207, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 3

Gene SKP1, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-207ENST00000520417 AEBP2Q6ZN18 517 aaPredicted RBP27.26■■□□□ 1.95
SKP1-207ENST00000520417 CHIC1Q5VXU3 224 aa26.3■■□□□ 1.8
SKP1-207ENST00000520417 SENP3Q9H4L4 574 aaPredicted RBP23.21■■□□□ 1.31
SKP1-207ENST00000520417 PHF23Q9BUL5 403 aaPredicted RBP23.09■■□□□ 1.29
SKP1-207ENST00000520417 FOXD1Q16676 465 aa21.58■■□□□ 1.05
SKP1-207ENST00000520417 PLPPR3Q6T4P5 718 aa21.25■□□□□ 0.99
SKP1-207ENST00000520417 ADRA2BP18089 450 aa20.53■□□□□ 0.88
SKP1-207ENST00000520417 PPP6R1Q9UPN7 881 aa20.51■□□□□ 0.87
SKP1-207ENST00000520417 PIAS4Q8N2W9 510 aaPredicted RBP20.34■□□□□ 0.85
SKP1-207ENST00000520417 MSH5O43196 834 aa20.03■□□□□ 0.8
SKP1-207ENST00000520417 POTEDQ86YR6 584 aa18.82■□□□□ 0.6
SKP1-207ENST00000520417 SCAF1Q9H7N4 1312 aaKnown RBP18.78■□□□□ 0.6
SKP1-207ENST00000520417 MAPK8IP2Q13387 824 aaPredicted RBP18.73■□□□□ 0.59
SKP1-207ENST00000520417 PPP4R3CPQ6ZMV5 832 aa18.71■□□□□ 0.59
SKP1-207ENST00000520417 DMRT2Q9Y5R5 561 aa18.45■□□□□ 0.54
SKP1-207ENST00000520417 CNKSR2Q8WXI2 1034 aa18.23■□□□□ 0.51
SKP1-207ENST00000520417 NCBP3Q53F19 620 aaKnown RBP18.14■□□□□ 0.49
SKP1-207ENST00000520417 RNF216Q9NWF9 866 aaPredicted RBP17.92■□□□□ 0.46
SKP1-207ENST00000520417 KCNA4P22459 653 aa17.91■□□□□ 0.46
SKP1-207ENST00000520417 HOXD11P31277 338 aaPredicted RBP17.9■□□□□ 0.46
SKP1-207ENST00000520417 DCAF8L1A6NGE4 600 aa17.88■□□□□ 0.45
SKP1-207ENST00000520417 NPM3O75607 178 aaKnown RBP17.84■□□□□ 0.45
SKP1-207ENST00000520417 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.22■□□□□ 0.351e-7■■■■□ 20.2
SKP1-207ENST00000520417 DNAJC5BQ9UF47 199 aa17.15■□□□□ 0.34
SKP1-207ENST00000520417 RNF39Q9H2S5 420 aa17.1■□□□□ 0.33
SKP1-207ENST00000520417 SLC4A1APQ9BWU0 796 aaKnown RBP17.02■□□□□ 0.32
SKP1-207ENST00000520417 CACNB1Q02641 598 aaPredicted RBP17.01■□□□□ 0.31
SKP1-207ENST00000520417 SLC4A2P04920 1241 aa16.89■□□□□ 0.29
SKP1-207ENST00000520417 C1QBPQ07021 282 aaKnown RBP16.89■□□□□ 0.29
SKP1-207ENST00000520417 U3KPZ7 1027 aaPredicted RBP16.81■□□□□ 0.28
SKP1-207ENST00000520417 FOXD4L1Q9NU39 408 aa16.56■□□□□ 0.24
SKP1-207ENST00000520417 CAPN15O75808 1086 aa16.51■□□□□ 0.23
SKP1-207ENST00000520417 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.5■□□□□ 0.23
SKP1-207ENST00000520417 MYCNP04198 464 aaPredicted RBP16.5■□□□□ 0.23
SKP1-207ENST00000520417 HNRNPUL2Q1KMD3 747 aaKnown RBP16.5■□□□□ 0.23
SKP1-207ENST00000520417 SPINK5Q9NQ38 1064 aaPredicted RBP16.48■□□□□ 0.23
SKP1-207ENST00000520417 ZBTB22O15209 634 aa16.43■□□□□ 0.22
SKP1-207ENST00000520417 APLP2Q06481 763 aa16.43■□□□□ 0.22
SKP1-207ENST00000520417 SAMD1Q6SPF0 538 aaPredicted RBP16.43■□□□□ 0.22
SKP1-207ENST00000520417 TRHP20396 242 aaPredicted RBP16.36■□□□□ 0.21
SKP1-207ENST00000520417 EHMT2Q96KQ7 1210 aa16.26■□□□□ 0.19
SKP1-207ENST00000520417 ZNF219Q9P2Y4 722 aaPredicted RBP16.25■□□□□ 0.19
SKP1-207ENST00000520417 DSG3P32926 999 aa16.19■□□□□ 0.18
SKP1-207ENST00000520417 ABCB7O75027 752 aa16.16■□□□□ 0.18
SKP1-207ENST00000520417 ATF5Q9Y2D1 282 aaPredicted RBP16.09■□□□□ 0.17
SKP1-207ENST00000520417 CSRNP3Q8WYN3 585 aa16.08■□□□□ 0.16
SKP1-207ENST00000520417 POLA2Q14181 598 aa15.96■□□□□ 0.15
SKP1-207ENST00000520417 ATXN8OSP0DMR3 200 aa15.95■□□□□ 0.14
SKP1-207ENST00000520417 ZBTB12Q9Y330 459 aaPredicted RBP15.62■□□□□ 0.09
SKP1-207ENST00000520417 FBLN2P98095 1184 aa15.49■□□□□ 0.07
SKP1-207ENST00000520417 RBM42Q9BTD8 480 aaKnown RBP15.46■□□□□ 0.07
SKP1-207ENST00000520417 OSCARQ8IYS5 282 aa15.43■□□□□ 0.06
SKP1-207ENST00000520417 MKRN4PQ13434 485 aaPredicted RBP15.34■□□□□ 0.05
SKP1-207ENST00000520417 AKT1S1Q96B36 256 aa15.18■□□□□ 0.02
SKP1-207ENST00000520417 SPDYE2BA6NHP3 402 aa15.16■□□□□ 0.02
SKP1-207ENST00000520417 SPDYE6P0CI01 402 aa15.16■□□□□ 0.02
SKP1-207ENST00000520417 SPDYE2Q495Y8 402 aa15.16■□□□□ 0.02
SKP1-207ENST00000520417 ZNF692Q9BU19 519 aaPredicted RBP15.13■□□□□ 0.01
SKP1-207ENST00000520417 REM2Q8IYK8 340 aaPredicted RBP15.05■□□□□ -0
SKP1-207ENST00000520417 CHRDL2Q6WN34 429 aa14.96□□□□□ -0.01
SKP1-207ENST00000520417 SSUH2Q9Y2M2 353 aa14.96□□□□□ -0.01
SKP1-207ENST00000520417 SPDYE4A6NLX3 237 aa14.91□□□□□ -0.02
SKP1-207ENST00000520417 PABPN1Q86U42 306 aaKnown RBP eCLIP14.91□□□□□ -0.02
SKP1-207ENST00000520417 PITPNM1O00562 1244 aa14.9□□□□□ -0.02
SKP1-207ENST00000520417 CLEC11AQ9Y240 323 aa14.89□□□□□ -0.03
SKP1-207ENST00000520417 POTEHQ6S545 545 aa14.86□□□□□ -0.03
SKP1-207ENST00000520417 SPDYE1Q8NFV5 336 aaPredicted RBP14.83□□□□□ -0.04
SKP1-207ENST00000520417 PIP4P2Q8N4L2 257 aa14.69□□□□□ -0.06
SKP1-207ENST00000520417 PRR29P0C7W0 189 aa14.65□□□□□ -0.06
SKP1-207ENST00000520417 FKBP8Q14318 412 aa14.65□□□□□ -0.06
SKP1-207ENST00000520417 FXR2P51116 673 aaKnown RBP eCLIP14.62□□□□□ -0.07
SKP1-207ENST00000520417 PRKAR2AP13861 404 aaKnown RBP14.56□□□□□ -0.08
SKP1-207ENST00000520417 STAG3Q9UJ98 1225 aa14.56□□□□□ -0.08
SKP1-207ENST00000520417 CHADLQ6NUI6 762 aa14.51□□□□□ -0.09
SKP1-207ENST00000520417 PROM2Q8N271 834 aa14.45□□□□□ -0.1
SKP1-207ENST00000520417 HAX1O00165 279 aa14.4□□□□□ -0.1
SKP1-207ENST00000520417 CREBZFQ9NS37 354 aa14.31□□□□□ -0.12
SKP1-207ENST00000520417 FARP1Q9Y4F1 1045 aaPredicted RBP14.28□□□□□ -0.12
SKP1-207ENST00000520417 MIER1Q8N108 512 aa14.23□□□□□ -0.13
SKP1-207ENST00000520417 PLEKHG5O94827 1062 aa14.2□□□□□ -0.14
SKP1-207ENST00000520417 PLCD3Q8N3E9 789 aa14.19□□□□□ -0.14
SKP1-207ENST00000520417 FBXO3Q9UK99 471 aa14.18□□□□□ -0.14
SKP1-207ENST00000520417 EVX2Q03828 476 aa14.16□□□□□ -0.14
SKP1-207ENST00000520417 C19orf67A6NJJ6 358 aa14.14□□□□□ -0.15
SKP1-207ENST00000520417 NPM1P06748 294 aaKnown RBP eCLIP14.12□□□□□ -0.15
SKP1-207ENST00000520417 CD44P16070 742 aaKnown RBP14.12□□□□□ -0.15
SKP1-207ENST00000520417 SP7Q8TDD2 431 aaPredicted RBP14.12□□□□□ -0.15
SKP1-207ENST00000520417 MNX1P50219 401 aaPredicted RBP14.06□□□□□ -0.16
SKP1-207ENST00000520417 PAK3O75914 559 aaPredicted RBP14.01□□□□□ -0.17
SKP1-207ENST00000520417 ZRANB1Q9UGI0 708 aa14.01□□□□□ -0.17
SKP1-207ENST00000520417 VASPP50552 380 aaPredicted RBP13.98□□□□□ -0.17
SKP1-207ENST00000520417 ZBTB47Q9UFB7 747 aaPredicted RBP13.97□□□□□ -0.17
SKP1-207ENST00000520417 KLHL34Q8N239 644 aa13.94□□□□□ -0.18
SKP1-207ENST00000520417 TSPYL2Q9H2G4 693 aaPredicted RBP13.94□□□□□ -0.18
SKP1-207ENST00000520417 GABBR2O75899 941 aa13.88□□□□□ -0.19
SKP1-207ENST00000520417 RASEFQ8IZ41 740 aa13.84□□□□□ -0.19
SKP1-207ENST00000520417 ZNF579Q8NAF0 562 aaKnown RBP13.84□□□□□ -0.19
SKP1-207ENST00000520417 PHF12Q96QT6 1004 aa13.84□□□□□ -0.19
SKP1-207ENST00000520417 NUBP1P53384 320 aa13.78□□□□□ -0.2
SKP1-207ENST00000520417 FAM212AQ96EL1 285 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 101.3 ms