Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.07■□□□□ 0.64
CLDN9O95484 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLDN9O95484 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLDN9O95484 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLDN9O95484 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CLDN9O95484 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC19.07■□□□□ 0.64
CLDN9O95484 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CLDN9O95484 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC19.07■□□□□ 0.64
CLDN9O95484 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
CLDN9O95484 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC19.07■□□□□ 0.64
CLDN9O95484 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC19.07■□□□□ 0.64
CLDN9O95484 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC19.07■□□□□ 0.64
CLDN9O95484 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.07■□□□□ 0.64
CLDN9O95484 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.07■□□□□ 0.64
CLDN9O95484 AC018553.1-201ENST00000616682 1458 ntBASIC19.07■□□□□ 0.64
CLDN9O95484 AIRN-201ENST00000601203 4374 ntBASIC19.07■□□□□ 0.64
CLDN9O95484 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLDN9O95484 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLDN9O95484 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
CLDN9O95484 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLDN9O95484 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLDN9O95484 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLDN9O95484 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.07■□□□□ 0.64
CLDN9O95484 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLDN9O95484 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.06■□□□□ 0.64
CLDN9O95484 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.06■□□□□ 0.64
CLDN9O95484 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CLDN9O95484 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLDN9O95484 AC093484.2-201ENST00000580996 2166 ntBASIC19.06■□□□□ 0.64
CLDN9O95484 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CLDN9O95484 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CLDN9O95484 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLDN9O95484 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.06■□□□□ 0.64
CLDN9O95484 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CLDN9O95484 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLDN9O95484 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC19.06■□□□□ 0.64
CLDN9O95484 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.06■□□□□ 0.64
CLDN9O95484 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLDN9O95484 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CLDN9O95484 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CLDN9O95484 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19.06■□□□□ 0.64
CLDN9O95484 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CLDN9O95484 GUSBP6-202ENST00000438529 1198 ntBASIC19.06■□□□□ 0.64
CLDN9O95484 TSPY6P-201ENST00000448518 926 ntBASIC19.06■□□□□ 0.64
CLDN9O95484 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CLDN9O95484 AC091874.3-201ENST00000512672 1195 ntBASIC19.06■□□□□ 0.64
CLDN9O95484 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
CLDN9O95484 AC005829.2-201ENST00000571422 1056 ntBASIC19.06■□□□□ 0.64
CLDN9O95484 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLDN9O95484 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC19.06■□□□□ 0.64
CLDN9O95484 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.06■□□□□ 0.64
CLDN9O95484 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CLDN9O95484 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
CLDN9O95484 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLDN9O95484 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CLDN9O95484 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.05■□□□□ 0.64
CLDN9O95484 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.05■□□□□ 0.64
CLDN9O95484 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC19.05■□□□□ 0.64
CLDN9O95484 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.05■□□□□ 0.64
CLDN9O95484 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CLDN9O95484 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLDN9O95484 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
CLDN9O95484 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CLDN9O95484 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLDN9O95484 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLDN9O95484 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CLDN9O95484 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CLDN9O95484 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.05■□□□□ 0.64
CLDN9O95484 GGT1-206ENST00000404223 952 ntTSL 2 BASIC19.05■□□□□ 0.64
CLDN9O95484 AC073210.2-201ENST00000430369 194 ntBASIC19.05■□□□□ 0.64
CLDN9O95484 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CLDN9O95484 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLDN9O95484 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC19.05■□□□□ 0.64
CLDN9O95484 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC19.05■□□□□ 0.64
CLDN9O95484 MIR4758-201ENST00000577688 71 ntBASIC19.05■□□□□ 0.64
CLDN9O95484 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLDN9O95484 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC19.05■□□□□ 0.64
CLDN9O95484 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
CLDN9O95484 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLDN9O95484 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLDN9O95484 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.05■□□□□ 0.64
CLDN9O95484 AC116351.2-201ENST00000606540 1585 ntBASIC19.05■□□□□ 0.64
CLDN9O95484 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
CLDN9O95484 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.05■□□□□ 0.64
CLDN9O95484 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CLDN9O95484 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLDN9O95484 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.05■□□□□ 0.64
CLDN9O95484 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.05■□□□□ 0.64
CLDN9O95484 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC19.05■□□□□ 0.64
CLDN9O95484 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLDN9O95484 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
CLDN9O95484 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
CLDN9O95484 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CLDN9O95484 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLDN9O95484 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CLDN9O95484 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLDN9O95484 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CLDN9O95484 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
CLDN9O95484 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CLDN9O95484 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms