Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.3■□□□□ 0.68
VPS4BO75351 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
VPS4BO75351 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS4BO75351 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
VPS4BO75351 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS4BO75351 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS4BO75351 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.29■□□□□ 0.68
VPS4BO75351 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS4BO75351 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VPS4BO75351 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS4BO75351 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC19.29■□□□□ 0.68
VPS4BO75351 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VPS4BO75351 AL512625.2-201ENST00000417533 625 ntBASIC19.29■□□□□ 0.68
VPS4BO75351 BX276092.2-201ENST00000417668 665 ntBASIC19.29■□□□□ 0.68
VPS4BO75351 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.29■□□□□ 0.68
VPS4BO75351 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC19.29■□□□□ 0.68
VPS4BO75351 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VPS4BO75351 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS4BO75351 AC087289.5-201ENST00000586076 3175 ntBASIC19.29■□□□□ 0.68
VPS4BO75351 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS4BO75351 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS4BO75351 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VPS4BO75351 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS4BO75351 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS4BO75351 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.28■□□□□ 0.68
VPS4BO75351 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.28■□□□□ 0.68
VPS4BO75351 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS4BO75351 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.28■□□□□ 0.68
VPS4BO75351 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.28■□□□□ 0.68
VPS4BO75351 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
VPS4BO75351 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS4BO75351 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS4BO75351 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.28■□□□□ 0.68
VPS4BO75351 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS4BO75351 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC19.28■□□□□ 0.68
VPS4BO75351 UNC93B4-201ENST00000505679 747 ntBASIC19.28■□□□□ 0.68
VPS4BO75351 AL162412.1-201ENST00000567129 965 ntBASIC19.28■□□□□ 0.68
VPS4BO75351 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
VPS4BO75351 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
VPS4BO75351 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VPS4BO75351 CYP21A1P-202ENST00000354927 1481 ntBASIC19.28■□□□□ 0.68
VPS4BO75351 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS4BO75351 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
VPS4BO75351 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.27■□□□□ 0.68
VPS4BO75351 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VPS4BO75351 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS4BO75351 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS4BO75351 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS4BO75351 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS4BO75351 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS4BO75351 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS4BO75351 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC19.27■□□□□ 0.68
VPS4BO75351 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.27■□□□□ 0.68
VPS4BO75351 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC19.27■□□□□ 0.68
VPS4BO75351 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC19.27■□□□□ 0.68
VPS4BO75351 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VPS4BO75351 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VPS4BO75351 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VPS4BO75351 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VPS4BO75351 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
VPS4BO75351 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS4BO75351 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VPS4BO75351 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VPS4BO75351 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.27■□□□□ 0.67
VPS4BO75351 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
VPS4BO75351 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VPS4BO75351 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19.26■□□□□ 0.67
VPS4BO75351 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VPS4BO75351 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
VPS4BO75351 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC19.26■□□□□ 0.67
VPS4BO75351 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
VPS4BO75351 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS4BO75351 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC19.26■□□□□ 0.67
VPS4BO75351 AC128676.1-201ENST00000454392 318 ntBASIC19.26■□□□□ 0.67
VPS4BO75351 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.26■□□□□ 0.67
VPS4BO75351 AC007322.4-201ENST00000509611 723 ntBASIC19.26■□□□□ 0.67
VPS4BO75351 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS4BO75351 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS4BO75351 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC19.26■□□□□ 0.67
VPS4BO75351 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
VPS4BO75351 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VPS4BO75351 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
VPS4BO75351 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.26■□□□□ 0.67
VPS4BO75351 AC093484.2-201ENST00000580996 2166 ntBASIC19.26■□□□□ 0.67
VPS4BO75351 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.26■□□□□ 0.67
VPS4BO75351 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VPS4BO75351 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS4BO75351 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.26■□□□□ 0.67
VPS4BO75351 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.25■□□□□ 0.67
VPS4BO75351 KRT16P6-202ENST00000425692 1426 ntBASIC19.25■□□□□ 0.67
VPS4BO75351 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.25■□□□□ 0.67
VPS4BO75351 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VPS4BO75351 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS4BO75351 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.25■□□□□ 0.67
VPS4BO75351 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS4BO75351 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS4BO75351 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS4BO75351 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS4BO75351 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.25■□□□□ 0.67
VPS4BO75351 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms