Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC188H7C350 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC188H7C350 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC188H7C350 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC188H7C350 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC188H7C350 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC20.5■□□□□ 0.87
CCDC188H7C350 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC188H7C350 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC188H7C350 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
CCDC188H7C350 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC188H7C350 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC188H7C350 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC188H7C350 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
CCDC188H7C350 NEFHP1-201ENST00000412845 2629 ntBASIC20.49■□□□□ 0.87
CCDC188H7C350 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
CCDC188H7C350 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC188H7C350 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
CCDC188H7C350 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC20.49■□□□□ 0.87
CCDC188H7C350 GALNS-213ENST00000569433 723 ntTSL 3 BASIC20.49■□□□□ 0.87
CCDC188H7C350 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC20.49■□□□□ 0.87
CCDC188H7C350 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC20.49■□□□□ 0.87
CCDC188H7C350 AC100791.3-201ENST00000617619 330 ntBASIC20.49■□□□□ 0.87
CCDC188H7C350 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
CCDC188H7C350 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC188H7C350 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC188H7C350 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC188H7C350 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC188H7C350 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
CCDC188H7C350 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC188H7C350 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC188H7C350 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC188H7C350 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC188H7C350 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC20.48■□□□□ 0.87
CCDC188H7C350 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC188H7C350 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
CCDC188H7C350 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
CCDC188H7C350 MCRIP2P1-201ENST00000394346 511 ntBASIC20.48■□□□□ 0.87
CCDC188H7C350 AC007322.4-201ENST00000509611 723 ntBASIC20.48■□□□□ 0.87
CCDC188H7C350 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC188H7C350 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20.48■□□□□ 0.87
CCDC188H7C350 AC016405.3-201ENST00000607710 860 ntBASIC20.48■□□□□ 0.87
CCDC188H7C350 AC005837.3-201ENST00000612163 286 ntBASIC20.48■□□□□ 0.87
CCDC188H7C350 AC010536.3-201ENST00000620306 533 ntBASIC20.48■□□□□ 0.87
CCDC188H7C350 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC188H7C350 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC188H7C350 CROCCP3-202ENST00000420820 1947 ntBASIC20.48■□□□□ 0.87
CCDC188H7C350 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20.48■□□□□ 0.87
CCDC188H7C350 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC188H7C350 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
CCDC188H7C350 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC188H7C350 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
CCDC188H7C350 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
CCDC188H7C350 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC188H7C350 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC188H7C350 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC20.47■□□□□ 0.87
CCDC188H7C350 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
CCDC188H7C350 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
CCDC188H7C350 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC188H7C350 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC188H7C350 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC20.47■□□□□ 0.87
CCDC188H7C350 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.47■□□□□ 0.87
CCDC188H7C350 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC20.47■□□□□ 0.87
CCDC188H7C350 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC20.47■□□□□ 0.87
CCDC188H7C350 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.47■□□□□ 0.87
CCDC188H7C350 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC188H7C350 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
CCDC188H7C350 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC188H7C350 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC20.47■□□□□ 0.87
CCDC188H7C350 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC188H7C350 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC20.47■□□□□ 0.87
CCDC188H7C350 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC188H7C350 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC20.46■□□□□ 0.87
CCDC188H7C350 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC188H7C350 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC188H7C350 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC20.46■□□□□ 0.87
CCDC188H7C350 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC188H7C350 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC188H7C350 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC20.46■□□□□ 0.87
CCDC188H7C350 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC188H7C350 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC188H7C350 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC188H7C350 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC188H7C350 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC188H7C350 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC188H7C350 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC20.46■□□□□ 0.87
CCDC188H7C350 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
CCDC188H7C350 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC188H7C350 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC188H7C350 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC188H7C350 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.46■□□□□ 0.87
CCDC188H7C350 AC105020.6-201ENST00000621523 1217 ntBASIC20.46■□□□□ 0.87
CCDC188H7C350 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC188H7C350 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
CCDC188H7C350 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC188H7C350 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC188H7C350 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC188H7C350 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC20.46■□□□□ 0.87
CCDC188H7C350 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CCDC188H7C350 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC188H7C350 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms