Protein–RNA interactions for Protein: A0A0D9SF12

CCDC163, Coiled-coil domain-containing 163, humanhuman

Predictions only

Length 145 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC163A0A0D9SF12 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC19.58■□□□□ 0.72
CCDC163A0A0D9SF12 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC163A0A0D9SF12 AC011558.1-201ENST00000623459 338 ntBASIC19.58■□□□□ 0.72
CCDC163A0A0D9SF12 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
CCDC163A0A0D9SF12 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC163A0A0D9SF12 AL121603.2-201ENST00000557373 2117 ntBASIC19.58■□□□□ 0.72
CCDC163A0A0D9SF12 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
CCDC163A0A0D9SF12 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
CCDC163A0A0D9SF12 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC163A0A0D9SF12 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC163A0A0D9SF12 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC163A0A0D9SF12 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC163A0A0D9SF12 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.58■□□□□ 0.72
CCDC163A0A0D9SF12 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC163A0A0D9SF12 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
CCDC163A0A0D9SF12 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC163A0A0D9SF12 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.57■□□□□ 0.72
CCDC163A0A0D9SF12 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.57■□□□□ 0.72
CCDC163A0A0D9SF12 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC163A0A0D9SF12 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC163A0A0D9SF12 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC19.57■□□□□ 0.72
CCDC163A0A0D9SF12 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC19.57■□□□□ 0.72
CCDC163A0A0D9SF12 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.57■□□□□ 0.72
CCDC163A0A0D9SF12 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
CCDC163A0A0D9SF12 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC163A0A0D9SF12 AL353719.1-201ENST00000566847 864 ntBASIC19.57■□□□□ 0.72
CCDC163A0A0D9SF12 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC19.57■□□□□ 0.72
CCDC163A0A0D9SF12 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC19.57■□□□□ 0.72
CCDC163A0A0D9SF12 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC19.57■□□□□ 0.72
CCDC163A0A0D9SF12 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC163A0A0D9SF12 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC19.57■□□□□ 0.72
CCDC163A0A0D9SF12 AC005229.4-201ENST00000610085 2198 ntBASIC19.57■□□□□ 0.72
CCDC163A0A0D9SF12 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC163A0A0D9SF12 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC163A0A0D9SF12 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC163A0A0D9SF12 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC163A0A0D9SF12 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
CCDC163A0A0D9SF12 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.56■□□□□ 0.72
CCDC163A0A0D9SF12 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.56■□□□□ 0.72
CCDC163A0A0D9SF12 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC163A0A0D9SF12 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC163A0A0D9SF12 CD70-202ENST00000423145 881 ntTSL 2 BASIC19.56■□□□□ 0.72
CCDC163A0A0D9SF12 TPM4P1-201ENST00000436100 807 ntBASIC19.56■□□□□ 0.72
CCDC163A0A0D9SF12 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC19.56■□□□□ 0.72
CCDC163A0A0D9SF12 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC19.56■□□□□ 0.72
CCDC163A0A0D9SF12 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC19.56■□□□□ 0.72
CCDC163A0A0D9SF12 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC163A0A0D9SF12 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC19.56■□□□□ 0.72
CCDC163A0A0D9SF12 CD320-202ENST00000537716 1119 ntTSL 2 BASIC19.56■□□□□ 0.72
CCDC163A0A0D9SF12 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC163A0A0D9SF12 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC163A0A0D9SF12 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC163A0A0D9SF12 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC163A0A0D9SF12 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC163A0A0D9SF12 IER3-202ENST00000376377 1350 ntBASIC19.56■□□□□ 0.72
CCDC163A0A0D9SF12 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC163A0A0D9SF12 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
CCDC163A0A0D9SF12 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.55■□□□□ 0.72
CCDC163A0A0D9SF12 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC163A0A0D9SF12 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC163A0A0D9SF12 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC19.55■□□□□ 0.72
CCDC163A0A0D9SF12 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC19.55■□□□□ 0.72
CCDC163A0A0D9SF12 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
CCDC163A0A0D9SF12 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC163A0A0D9SF12 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC163A0A0D9SF12 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC19.55■□□□□ 0.72
CCDC163A0A0D9SF12 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC163A0A0D9SF12 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC19.55■□□□□ 0.72
CCDC163A0A0D9SF12 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC163A0A0D9SF12 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
CCDC163A0A0D9SF12 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC163A0A0D9SF12 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC19.55■□□□□ 0.72
CCDC163A0A0D9SF12 PHGDH-210ENST00000641115 1638 ntBASIC19.54■□□□□ 0.72
CCDC163A0A0D9SF12 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC163A0A0D9SF12 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC163A0A0D9SF12 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC163A0A0D9SF12 AL024507.2-201ENST00000606070 2574 ntBASIC19.54■□□□□ 0.72
CCDC163A0A0D9SF12 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
CCDC163A0A0D9SF12 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC163A0A0D9SF12 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC163A0A0D9SF12 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
CCDC163A0A0D9SF12 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC163A0A0D9SF12 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC163A0A0D9SF12 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC163A0A0D9SF12 DERL1-203ENST00000419562 918 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC163A0A0D9SF12 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC19.54■□□□□ 0.72
CCDC163A0A0D9SF12 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
CCDC163A0A0D9SF12 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC163A0A0D9SF12 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
CCDC163A0A0D9SF12 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC163A0A0D9SF12 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC163A0A0D9SF12 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
CCDC163A0A0D9SF12 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
CCDC163A0A0D9SF12 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC163A0A0D9SF12 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC163A0A0D9SF12 DPP3P2-201ENST00000416030 1696 ntBASIC19.53■□□□□ 0.72
CCDC163A0A0D9SF12 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC163A0A0D9SF12 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC19.53■□□□□ 0.72
CCDC163A0A0D9SF12 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC163A0A0D9SF12 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms