Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 AC239859.2-201ENST00000444165 318 ntBASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 AL356740.2-201ENST00000601559 647 ntBASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC15.41■□□□□ 0.06
TRAV1-1A0A0B4J248 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
TRAV1-1A0A0B4J248 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC15.4■□□□□ 0.06
TRAV1-1A0A0B4J248 AC141586.3-201ENST00000562166 1838 ntBASIC15.4■□□□□ 0.06
TRAV1-1A0A0B4J248 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV1-1A0A0B4J248 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV1-1A0A0B4J248 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV1-1A0A0B4J248 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC15.4■□□□□ 0.06
TRAV1-1A0A0B4J248 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV1-1A0A0B4J248 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC15.4■□□□□ 0.06
TRAV1-1A0A0B4J248 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC15.4■□□□□ 0.06
TRAV1-1A0A0B4J248 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
TRAV1-1A0A0B4J248 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC15.4■□□□□ 0.06
TRAV1-1A0A0B4J248 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC15.4■□□□□ 0.06
TRAV1-1A0A0B4J248 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
TRAV1-1A0A0B4J248 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV1-1A0A0B4J248 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC15.4■□□□□ 0.06
TRAV1-1A0A0B4J248 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV1-1A0A0B4J248 FAM21FP-204ENST00000608637 956 ntBASIC15.4■□□□□ 0.06
TRAV1-1A0A0B4J248 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV1-1A0A0B4J248 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
TRAV1-1A0A0B4J248 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV1-1A0A0B4J248 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV1-1A0A0B4J248 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC15.4■□□□□ 0.06
TRAV1-1A0A0B4J248 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV1-1A0A0B4J248 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV1-1A0A0B4J248 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV1-1A0A0B4J248 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV1-1A0A0B4J248 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC15.4■□□□□ 0.06
TRAV1-1A0A0B4J248 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC15.4■□□□□ 0.06
TRAV1-1A0A0B4J248 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV1-1A0A0B4J248 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
TRAV1-1A0A0B4J248 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV1-1A0A0B4J248 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
TRAV1-1A0A0B4J248 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV1-1A0A0B4J248 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
TRAV1-1A0A0B4J248 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV1-1A0A0B4J248 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV1-1A0A0B4J248 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV1-1A0A0B4J248 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV1-1A0A0B4J248 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
TRAV1-1A0A0B4J248 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC15.39■□□□□ 0.05
TRAV1-1A0A0B4J248 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC15.39■□□□□ 0.05
TRAV1-1A0A0B4J248 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV1-1A0A0B4J248 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
TRAV1-1A0A0B4J248 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
TRAV1-1A0A0B4J248 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC15.39■□□□□ 0.05
TRAV1-1A0A0B4J248 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV1-1A0A0B4J248 AC020763.4-201ENST00000623414 4170 ntBASIC15.39■□□□□ 0.05
TRAV1-1A0A0B4J248 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV1-1A0A0B4J248 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC15.39■□□□□ 0.05
TRAV1-1A0A0B4J248 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV1-1A0A0B4J248 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV1-1A0A0B4J248 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV1-1A0A0B4J248 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV1-1A0A0B4J248 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV1-1A0A0B4J248 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV1-1A0A0B4J248 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV1-1A0A0B4J248 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV1-1A0A0B4J248 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV1-1A0A0B4J248 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC15.38■□□□□ 0.05
TRAV1-1A0A0B4J248 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV1-1A0A0B4J248 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV1-1A0A0B4J248 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC15.38■□□□□ 0.05
TRAV1-1A0A0B4J248 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV1-1A0A0B4J248 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
TRAV1-1A0A0B4J248 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms