Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 NVL-203ENST00000391875 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC7.73□□□□□ -1.17
USB1Q9BQ65 C14orf166-201ENST00000261700 7075 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
USB1Q9BQ65 CLEC1A-201ENST00000315330 2685 ntAPPRIS P3 TSL 1 (best) BASIC7.73□□□□□ -1.17
USB1Q9BQ65 SMG1P4-203ENST00000517529 1589 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
USB1Q9BQ65 ODF2L-203ENST00000359242 7560 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
USB1Q9BQ65 LINC02044-201ENST00000490139 2502 ntTSL 2 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 NECAP1-210ENST00000638237 2517 ntAPPRIS ALT1 TSL 5 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 AP002907.1-201ENST00000606361 1430 ntBASIC7.73□□□□□ -1.17
USB1Q9BQ65 LINC00837-201ENST00000443246 3991 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
USB1Q9BQ65 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
USB1Q9BQ65 RNU6-582P-201ENST00000362989 107 ntBASIC7.73□□□□□ -1.17
USB1Q9BQ65 NFIB-202ENST00000380924 840 ntTSL 5 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 SNORD115.1-201ENST00000391109 76 ntBASIC7.73□□□□□ -1.17
USB1Q9BQ65 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC7.73□□□□□ -1.17
USB1Q9BQ65 AC074254.1-201ENST00000399152 404 ntTSL 5 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 U3.33-201ENST00000408117 204 ntBASIC7.73□□□□□ -1.17
USB1Q9BQ65 AL136380.2-201ENST00000411837 492 ntBASIC7.73□□□□□ -1.17
USB1Q9BQ65 SMIM12-201ENST00000417239 684 ntAPPRIS P1 TSL 3 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 OSBPL10-AS1-201ENST00000417313 475 ntTSL 3 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 WRBP1-201ENST00000423352 334 ntBASIC7.73□□□□□ -1.17
USB1Q9BQ65 LINC01363-201ENST00000426709 971 ntTSL 5 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 AC244205.2-201ENST00000434790 898 ntTSL 5 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 AL138787.1-202ENST00000437804 898 ntBASIC7.73□□□□□ -1.17
USB1Q9BQ65 AL136454.1-201ENST00000443181 466 ntBASIC7.73□□□□□ -1.17
USB1Q9BQ65 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 SLC31A1P1-201ENST00000451221 567 ntBASIC7.73□□□□□ -1.17
USB1Q9BQ65 OSBPL10-AS1-207ENST00000455961 411 ntTSL 2 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 AC104619.1-201ENST00000459634 631 ntBASIC7.73□□□□□ -1.17
USB1Q9BQ65 CASQ1-202ENST00000467691 595 ntTSL 3 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 RPL12P5-201ENST00000475149 392 ntBASIC7.73□□□□□ -1.17
USB1Q9BQ65 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 AC010368.1-201ENST00000510160 456 ntBASIC7.73□□□□□ -1.17
USB1Q9BQ65 AC011352.2-201ENST00000514574 1016 ntBASIC7.73□□□□□ -1.17
USB1Q9BQ65 RNU6-1334P-201ENST00000516032 105 ntBASIC7.73□□□□□ -1.17
USB1Q9BQ65 AC246817.2-201ENST00000523971 577 ntTSL 5 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 DERA-209ENST00000532964 854 ntTSL 5 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 SOX5-213ENST00000541847 758 ntTSL 3 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 ANAPC15-211ENST00000542531 812 ntAPPRIS P3 TSL 5 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 RPL41-204ENST00000546591 699 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
USB1Q9BQ65 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 NMNAT1P1-201ENST00000554095 876 ntBASIC7.73□□□□□ -1.17
USB1Q9BQ65 AL355922.4-201ENST00000555642 449 ntTSL 3 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 RN7SL118P-201ENST00000580570 302 ntBASIC7.73□□□□□ -1.17
USB1Q9BQ65 AC067796.1-201ENST00000586795 496 ntBASIC7.73□□□□□ -1.17
USB1Q9BQ65 AC090213.1-201ENST00000586841 546 ntTSL 4 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 AC011497.2-201ENST00000600255 639 ntBASIC7.73□□□□□ -1.17
USB1Q9BQ65 LINC01396-201ENST00000609099 527 ntTSL 3 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 AC019193.3-201ENST00000609144 554 ntBASIC7.73□□□□□ -1.17
USB1Q9BQ65 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 AC093913.1-201ENST00000614178 329 ntBASIC7.73□□□□□ -1.17
USB1Q9BQ65 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 AC007326.3-201ENST00000636418 176 ntBASIC7.73□□□□□ -1.17
USB1Q9BQ65 snoMe28S-Am2634.2-201ENST00000637869 80 ntBASIC7.73□□□□□ -1.17
USB1Q9BQ65 AL365475.1-201ENST00000565135 1949 ntBASIC7.73□□□□□ -1.17
USB1Q9BQ65 CKAP2-201ENST00000258607 3375 ntAPPRIS P3 TSL 1 (best) BASIC7.73□□□□□ -1.17
USB1Q9BQ65 HLTF-201ENST00000310053 5317 ntAPPRIS P3 TSL 1 (best) BASIC7.73□□□□□ -1.17
USB1Q9BQ65 COL6A5-201ENST00000265379 9214 ntAPPRIS P1 TSL 5 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 SLC9A6-209ENST00000636347 4867 ntTSL 5 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 LHX9-201ENST00000367387 7836 ntAPPRIS P3 TSL 1 (best) BASIC7.73□□□□□ -1.17
USB1Q9BQ65 SLC5A1-201ENST00000266088 5061 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
USB1Q9BQ65 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
USB1Q9BQ65 LDB2-203ENST00000502640 2626 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
USB1Q9BQ65 TRPS1-208ENST00000519076 3329 ntTSL 5 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 MKL2-209ENST00000574045 3309 ntAPPRIS P3 TSL 1 (best) BASIC7.73□□□□□ -1.17
USB1Q9BQ65 LPL-201ENST00000311322 3846 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
USB1Q9BQ65 KIF14-202ENST00000614960 6838 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
USB1Q9BQ65 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 ODF2-220ENST00000604420 3030 ntTSL 2 BASIC7.73□□□□□ -1.17
USB1Q9BQ65 PCM1-212ENST00000519253 6443 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
USB1Q9BQ65 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
USB1Q9BQ65 AL023806.3-201ENST00000638502 2704 ntBASIC7.72□□□□□ -1.17
USB1Q9BQ65 PPP2R2A-202ENST00000380737 3940 ntAPPRIS P3 TSL 1 (best) BASIC7.72□□□□□ -1.17
USB1Q9BQ65 NFRKB-202ENST00000524746 4114 ntAPPRIS P1 TSL 5 BASIC7.72□□□□□ -1.17
USB1Q9BQ65 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
USB1Q9BQ65 RTL3-201ENST00000321110 2648 ntAPPRIS P1 TSL 2 BASIC7.72□□□□□ -1.17
USB1Q9BQ65 FBXW7-207ENST00000603841 2261 ntAPPRIS P4 TSL 1 (best) BASIC7.72□□□□□ -1.17
USB1Q9BQ65 CASR-205ENST00000639785 10047 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
USB1Q9BQ65 AC021683.2-203ENST00000591283 4902 ntTSL 5 BASIC7.72□□□□□ -1.17
USB1Q9BQ65 ZDBF2-201ENST00000374423 10286 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
USB1Q9BQ65 TNPO3-204ENST00000482320 3585 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
USB1Q9BQ65 MITF-203ENST00000328528 4680 ntTSL 5 BASIC7.72□□□□□ -1.17
USB1Q9BQ65 NT5C2-201ENST00000343289 3435 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
USB1Q9BQ65 CD109-203ENST00000437994 9401 ntAPPRIS ALT1 TSL 1 (best) BASIC7.72□□□□□ -1.17
USB1Q9BQ65 SPTLC3-201ENST00000399002 6169 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
USB1Q9BQ65 C14orf2-201ENST00000286953 643 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
USB1Q9BQ65 PRYP4-201ENST00000306589 444 ntBASIC7.72□□□□□ -1.17
USB1Q9BQ65 MRAP-202ENST00000339944 440 ntAPPRIS ALT2 TSL 1 (best) BASIC7.72□□□□□ -1.17
USB1Q9BQ65 FCAR-204ENST00000359272 828 ntAPPRIS ALT2 TSL 1 (best) BASIC7.72□□□□□ -1.17
USB1Q9BQ65 RNA5SP78-201ENST00000364622 118 ntBASIC7.72□□□□□ -1.17
USB1Q9BQ65 SERPINB12-202ENST00000382768 1278 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
USB1Q9BQ65 SNORA69-201ENST00000383895 132 ntBASIC7.72□□□□□ -1.17
USB1Q9BQ65 LINC01353-201ENST00000412772 775 ntTSL 3 BASIC7.72□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 78.7 ms