Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 AL080312.2-201ENST00000613001 630 ntBASIC6.12□□□□□ -1.43
COL28A1Q2UY09 AL162574.2-201ENST00000614618 657 ntBASIC6.12□□□□□ -1.43
COL28A1Q2UY09 Six3os1_4.1-201ENST00000615706 324 ntBASIC6.12□□□□□ -1.43
COL28A1Q2UY09 OR1N1-202ENST00000619659 939 ntBASIC6.12□□□□□ -1.43
COL28A1Q2UY09 AP000577.1-201ENST00000624366 878 ntBASIC6.12□□□□□ -1.43
COL28A1Q2UY09 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 CACNB4-223ENST00000636380 1756 ntTSL 5 BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 AC005618.1-201ENST00000606901 3148 ntBASIC6.12□□□□□ -1.43
COL28A1Q2UY09 COG2-209ENST00000534989 2963 ntTSL 2 BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
COL28A1Q2UY09 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
COL28A1Q2UY09 NDC80-201ENST00000261597 2172 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL28A1Q2UY09 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC6.11□□□□□ -1.43
COL28A1Q2UY09 PLCH1-206ENST00000494598 3525 ntTSL 5 BASIC6.11□□□□□ -1.43
COL28A1Q2UY09 CDY11P-201ENST00000447168 1651 ntBASIC6.11□□□□□ -1.43
COL28A1Q2UY09 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL28A1Q2UY09 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL28A1Q2UY09 CASC19-238ENST00000641523 1558 ntBASIC6.11□□□□□ -1.43
COL28A1Q2UY09 AF064860.2-201ENST00000457325 1542 ntTSL 3 BASIC6.11□□□□□ -1.43
COL28A1Q2UY09 AC018717.1-201ENST00000457712 1505 ntBASIC6.11□□□□□ -1.43
COL28A1Q2UY09 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC6.11□□□□□ -1.43
COL28A1Q2UY09 AL929601.4-201ENST00000613011 1341 ntBASIC6.11□□□□□ -1.43
COL28A1Q2UY09 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL28A1Q2UY09 CCR8-201ENST00000326306 1253 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL28A1Q2UY09 VTRNA3-1P-201ENST00000362552 102 ntBASIC6.11□□□□□ -1.43
COL28A1Q2UY09 SNORA70H-201ENST00000383910 135 ntBASIC6.11□□□□□ -1.43
COL28A1Q2UY09 SNORA70J-201ENST00000384182 135 ntBASIC6.11□□□□□ -1.43
COL28A1Q2UY09 MIR585-201ENST00000384887 94 ntBASIC6.11□□□□□ -1.43
COL28A1Q2UY09 MIR143-201ENST00000385300 106 ntBASIC6.11□□□□□ -1.43
COL28A1Q2UY09 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
COL28A1Q2UY09 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL28A1Q2UY09 AL157702.1-201ENST00000398764 426 ntBASIC6.11□□□□□ -1.43
COL28A1Q2UY09 DHFRP2-201ENST00000414224 547 ntBASIC6.11□□□□□ -1.43
COL28A1Q2UY09 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC6.11□□□□□ -1.43
COL28A1Q2UY09 AL929472.1-201ENST00000417484 429 ntBASIC6.11□□□□□ -1.43
COL28A1Q2UY09 RPL12P43-201ENST00000420608 499 ntBASIC6.11□□□□□ -1.43
COL28A1Q2UY09 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
COL28A1Q2UY09 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC6.11□□□□□ -1.43
COL28A1Q2UY09 AC073072.2-201ENST00000447425 348 ntBASIC6.11□□□□□ -1.43
COL28A1Q2UY09 AC011476.1-201ENST00000466725 307 ntBASIC6.11□□□□□ -1.43
COL28A1Q2UY09 RN7SL561P-201ENST00000488553 281 ntBASIC6.11□□□□□ -1.43
COL28A1Q2UY09 EIF3LP3-201ENST00000495197 822 ntBASIC6.11□□□□□ -1.43
COL28A1Q2UY09 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC6.11□□□□□ -1.43
COL28A1Q2UY09 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC6.11□□□□□ -1.43
COL28A1Q2UY09 AC016642.1-202ENST00000509476 641 ntTSL 3 BASIC6.11□□□□□ -1.43
COL28A1Q2UY09 AC114781.3-201ENST00000512083 142 ntBASIC6.11□□□□□ -1.43
COL28A1Q2UY09 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC6.11□□□□□ -1.43
COL28A1Q2UY09 AP002981.1-201ENST00000517692 975 ntBASIC6.11□□□□□ -1.43
COL28A1Q2UY09 TMEM97P2-201ENST00000517841 403 ntBASIC6.11□□□□□ -1.43
COL28A1Q2UY09 HIGD1AP5-201ENST00000529959 259 ntBASIC6.11□□□□□ -1.43
COL28A1Q2UY09 AC036111.2-201ENST00000533247 901 ntBASIC6.11□□□□□ -1.43
COL28A1Q2UY09 TEX41-218ENST00000596540 882 ntTSL 5 BASIC6.11□□□□□ -1.43
COL28A1Q2UY09 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC6.11□□□□□ -1.43
COL28A1Q2UY09 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL28A1Q2UY09 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL28A1Q2UY09 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL28A1Q2UY09 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL28A1Q2UY09 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL28A1Q2UY09 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC6.11□□□□□ -1.43
COL28A1Q2UY09 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC6.11□□□□□ -1.43
COL28A1Q2UY09 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC6.11□□□□□ -1.43
COL28A1Q2UY09 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC6.11□□□□□ -1.43
COL28A1Q2UY09 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL28A1Q2UY09 AL591848.4-201ENST00000567832 3472 ntBASIC6.11□□□□□ -1.43
COL28A1Q2UY09 AC015689.2-201ENST00000528172 1738 ntBASIC6.11□□□□□ -1.43
COL28A1Q2UY09 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL28A1Q2UY09 SELE-203ENST00000367775 3389 ntTSL 5 BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 AC093297.3-201ENST00000607056 2517 ntBASIC6.1□□□□□ -1.43
COL28A1Q2UY09 AC068769.1-201ENST00000474767 2426 ntBASIC6.1□□□□□ -1.43
COL28A1Q2UY09 CPED1-201ENST00000310396 5340 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 EEF1A1P9-201ENST00000514975 1383 ntBASIC6.1□□□□□ -1.43
COL28A1Q2UY09 FAM208A-210ENST00000614531 3441 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 TTTY4B-201ENST00000420149 1346 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 TTTY4-201ENST00000436568 1346 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 TTTY4C-201ENST00000456123 1346 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 IFNK-201ENST00000276943 1140 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 OR2M4-201ENST00000306687 936 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 PCYT1B-201ENST00000356768 1289 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 RNU6-670P-201ENST00000364312 104 ntBASIC6.1□□□□□ -1.43
COL28A1Q2UY09 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 AL139039.2-201ENST00000407436 479 ntBASIC6.1□□□□□ -1.43
COL28A1Q2UY09 RN7SKP296-201ENST00000411185 341 ntBASIC6.1□□□□□ -1.43
COL28A1Q2UY09 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC6.1□□□□□ -1.43
COL28A1Q2UY09 DEFA9P-201ENST00000433042 285 ntBASIC6.1□□□□□ -1.43
COL28A1Q2UY09 AL451136.1-201ENST00000435399 325 ntBASIC6.1□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms