Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC7.21□□□□□ -1.26
COL6A1P12109 BNIP3P32-201ENST00000600015 554 ntBASIC7.21□□□□□ -1.26
COL6A1P12109 AC146944.4-201ENST00000602697 718 ntBASIC7.21□□□□□ -1.26
COL6A1P12109 AL049840.5-201ENST00000602827 552 ntBASIC7.21□□□□□ -1.26
COL6A1P12109 AL583832.1-201ENST00000603227 784 ntBASIC7.21□□□□□ -1.26
COL6A1P12109 DUXAP3-201ENST00000603616 594 ntBASIC7.21□□□□□ -1.26
COL6A1P12109 AC104836.2-201ENST00000609675 1293 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
COL6A1P12109 AC117490.2-201ENST00000610042 594 ntBASIC7.21□□□□□ -1.26
COL6A1P12109 AC010333.3-201ENST00000615100 402 ntBASIC7.21□□□□□ -1.26
COL6A1P12109 TTN-AS1-268ENST00000629094 604 ntTSL 5 BASIC7.21□□□□□ -1.26
COL6A1P12109 AP003399.1-201ENST00000637534 361 ntBASIC7.21□□□□□ -1.26
COL6A1P12109 AC116631.1-202ENST00000640984 683 ntBASIC7.21□□□□□ -1.26
COL6A1P12109 ODF2L-202ENST00000317336 4376 ntTSL 5 BASIC7.21□□□□□ -1.26
COL6A1P12109 RGPD3-201ENST00000304514 5510 ntAPPRIS ALT2 TSL 2 BASIC7.21□□□□□ -1.26
COL6A1P12109 AL450423.1-201ENST00000615176 1857 ntTSL 2 BASIC7.21□□□□□ -1.26
COL6A1P12109 LEPR-203ENST00000371058 2805 ntTSL 5 BASIC7.21□□□□□ -1.26
COL6A1P12109 AGO1-202ENST00000373206 3996 ntTSL 2 BASIC7.21□□□□□ -1.26
COL6A1P12109 CLCN3-202ENST00000360642 3208 ntTSL 2 BASIC7.21□□□□□ -1.26
COL6A1P12109 CYB5B-201ENST00000307892 4286 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
COL6A1P12109 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC7.21□□□□□ -1.26
COL6A1P12109 TMED10-201ENST00000303575 4127 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL6A1P12109 LINC02532-207ENST00000436659 1387 ntTSL 2 BASIC7.2□□□□□ -1.26
COL6A1P12109 CASC19-238ENST00000641523 1558 ntBASIC7.2□□□□□ -1.26
COL6A1P12109 ZNF148-201ENST00000360647 9651 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL6A1P12109 BRD8-204ENST00000411594 2967 ntTSL 5 BASIC7.2□□□□□ -1.26
COL6A1P12109 SLC7A6-209ENST00000566454 6308 ntAPPRIS P1 TSL 5 BASIC7.2□□□□□ -1.26
COL6A1P12109 PTPN3-203ENST00000412145 8765 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
COL6A1P12109 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL6A1P12109 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL6A1P12109 ZYG11B-201ENST00000294353 8093 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL6A1P12109 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC7.2□□□□□ -1.26
COL6A1P12109 ERC1-204ENST00000397203 9118 ntTSL 5 BASIC7.2□□□□□ -1.26
COL6A1P12109 ADH7-202ENST00000437033 2516 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL6A1P12109 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
COL6A1P12109 RNA5SP273-201ENST00000362484 113 ntBASIC7.2□□□□□ -1.26
COL6A1P12109 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC7.2□□□□□ -1.26
COL6A1P12109 RFPL3S-201ENST00000382084 1117 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
COL6A1P12109 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC7.2□□□□□ -1.26
COL6A1P12109 AC118754.1-201ENST00000416958 370 ntTSL 3 BASIC7.2□□□□□ -1.26
COL6A1P12109 VN1R31P-201ENST00000417498 730 ntBASIC7.2□□□□□ -1.26
COL6A1P12109 GNRHR-202ENST00000420975 859 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
COL6A1P12109 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
COL6A1P12109 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC7.2□□□□□ -1.26
COL6A1P12109 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC7.2□□□□□ -1.26
COL6A1P12109 LMCD1-AS1-202ENST00000439407 576 ntTSL 4 BASIC7.2□□□□□ -1.26
COL6A1P12109 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC7.2□□□□□ -1.26
COL6A1P12109 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
COL6A1P12109 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
COL6A1P12109 MYO5BP2-201ENST00000449815 1277 ntBASIC7.2□□□□□ -1.26
COL6A1P12109 AC022498.1-201ENST00000449845 696 ntTSL 3 BASIC7.2□□□□□ -1.26
COL6A1P12109 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC7.2□□□□□ -1.26
COL6A1P12109 AC006539.1-201ENST00000481419 501 ntBASIC7.2□□□□□ -1.26
COL6A1P12109 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
COL6A1P12109 SSX8-201ENST00000506270 579 ntBASIC7.2□□□□□ -1.26
COL6A1P12109 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC7.2□□□□□ -1.26
COL6A1P12109 AC008429.4-201ENST00000521201 182 ntBASIC7.2□□□□□ -1.26
COL6A1P12109 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC7.2□□□□□ -1.26
COL6A1P12109 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC7.2□□□□□ -1.26
COL6A1P12109 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
COL6A1P12109 LDHC-203ENST00000535809 757 ntTSL 5 BASIC7.2□□□□□ -1.26
COL6A1P12109 LDHC-205ENST00000537486 583 ntTSL 5 BASIC7.2□□□□□ -1.26
COL6A1P12109 AC008126.1-201ENST00000549019 480 ntBASIC7.2□□□□□ -1.26
COL6A1P12109 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC7.2□□□□□ -1.26
COL6A1P12109 AC007956.1-201ENST00000555623 542 ntBASIC7.2□□□□□ -1.26
COL6A1P12109 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC7.2□□□□□ -1.26
COL6A1P12109 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC7.2□□□□□ -1.26
COL6A1P12109 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC7.2□□□□□ -1.26
COL6A1P12109 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC7.2□□□□□ -1.26
COL6A1P12109 NIFKP6-201ENST00000598115 845 ntBASIC7.2□□□□□ -1.26
COL6A1P12109 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC7.2□□□□□ -1.26
COL6A1P12109 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC7.2□□□□□ -1.26
COL6A1P12109 AC005277.2-201ENST00000617898 390 ntBASIC7.2□□□□□ -1.26
COL6A1P12109 AC074276.2-201ENST00000619891 348 ntBASIC7.2□□□□□ -1.26
COL6A1P12109 AC009120.7-201ENST00000623452 780 ntBASIC7.2□□□□□ -1.26
COL6A1P12109 AC007683.2-201ENST00000624681 714 ntBASIC7.2□□□□□ -1.26
COL6A1P12109 MAP4K4-221ENST00000634702 3800 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
COL6A1P12109 SENP8-201ENST00000340912 4281 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL6A1P12109 AC099062.1-202ENST00000640362 3864 ntTSL 5 BASIC7.2□□□□□ -1.26
COL6A1P12109 IBTK-201ENST00000306270 6054 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL6A1P12109 OR2T7-201ENST00000641057 3463 ntAPPRIS P1 BASIC7.2□□□□□ -1.26
COL6A1P12109 AC018717.1-201ENST00000457712 1505 ntBASIC7.2□□□□□ -1.26
COL6A1P12109 TGIF1-211ENST00000548489 1536 ntTSL 3 BASIC7.2□□□□□ -1.26
COL6A1P12109 AC121758.1-201ENST00000557452 3942 ntTSL 2 BASIC7.2□□□□□ -1.26
COL6A1P12109 PMFBP1-201ENST00000237353 3527 ntAPPRIS P2 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL6A1P12109 TRAF5-202ENST00000336184 3972 ntAPPRIS P1 TSL 5 BASIC7.2□□□□□ -1.26
COL6A1P12109 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
COL6A1P12109 STARD4-AS1-201ENST00000500779 5525 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
COL6A1P12109 LYSMD3-201ENST00000315948 4259 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL6A1P12109 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL6A1P12109 CBR4-201ENST00000306193 3443 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL6A1P12109 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC7.2□□□□□ -1.26
COL6A1P12109 ZNF438-201ENST00000331737 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL6A1P12109 DMC1-203ENST00000428462 2082 ntTSL 2 BASIC7.2□□□□□ -1.26
COL6A1P12109 AC019270.1-201ENST00000523495 3488 ntTSL 5 BASIC7.2□□□□□ -1.26
COL6A1P12109 CHST12-201ENST00000258711 15979 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
COL6A1P12109 SYTL5-202ENST00000456733 4704 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
COL6A1P12109 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC7.19□□□□□ -1.26
COL6A1P12109 PPWD1-201ENST00000261308 2166 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
COL6A1P12109 PPWD1-214ENST00000535264 2195 ntTSL 2 BASIC7.19□□□□□ -1.26
COL6A1P12109 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC7.19□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms