Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC9.58□□□□□ -0.88
IFT140Q96RY7 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC9.58□□□□□ -0.88
IFT140Q96RY7 OR5AZ1P-201ENST00000527448 943 ntBASIC9.58□□□□□ -0.88
IFT140Q96RY7 AC063949.1-201ENST00000552900 865 ntBASIC9.58□□□□□ -0.88
IFT140Q96RY7 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC9.58□□□□□ -0.88
IFT140Q96RY7 WBP1LP8-201ENST00000617401 327 ntBASIC9.58□□□□□ -0.88
IFT140Q96RY7 AC090527.3-201ENST00000619041 548 ntBASIC9.58□□□□□ -0.88
IFT140Q96RY7 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC9.58□□□□□ -0.88
IFT140Q96RY7 HMBOX1-211ENST00000524238 1731 ntTSL 2 BASIC9.58□□□□□ -0.88
IFT140Q96RY7 ZNF532-224ENST00000591808 5171 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
IFT140Q96RY7 ABCD3-202ENST00000370214 3538 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
IFT140Q96RY7 EFCAB6-203ENST00000396231 4424 ntAPPRIS ALT2 TSL 1 (best) BASIC9.58□□□□□ -0.88
IFT140Q96RY7 NXF2B-204ENST00000618302 2884 ntAPPRIS P1 TSL 2 BASIC9.58□□□□□ -0.88
IFT140Q96RY7 ZNF438-208ENST00000538351 3284 ntAPPRIS ALT2 TSL 2 BASIC9.57□□□□□ -0.88
IFT140Q96RY7 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
IFT140Q96RY7 KIF1B-203ENST00000377083 5885 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
IFT140Q96RY7 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC9.57□□□□□ -0.88
IFT140Q96RY7 AL731556.1-201ENST00000394628 3711 ntBASIC9.57□□□□□ -0.88
IFT140Q96RY7 SCUBE3-201ENST00000274938 7356 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
IFT140Q96RY7 RTN3-202ENST00000339997 4886 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
IFT140Q96RY7 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
IFT140Q96RY7 AL157831.2-201ENST00000564681 3095 ntBASIC9.57□□□□□ -0.88
IFT140Q96RY7 GARNL3-205ENST00000435213 3599 ntTSL 2 BASIC9.57□□□□□ -0.88
IFT140Q96RY7 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC9.57□□□□□ -0.88
IFT140Q96RY7 RBMY2QP-201ENST00000429799 1147 ntBASIC9.57□□□□□ -0.88
IFT140Q96RY7 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC9.57□□□□□ -0.88
IFT140Q96RY7 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC9.57□□□□□ -0.88
IFT140Q96RY7 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC9.57□□□□□ -0.88
IFT140Q96RY7 AL512310.9-201ENST00000553311 948 ntBASIC9.57□□□□□ -0.88
IFT140Q96RY7 AC079075.1-201ENST00000559543 878 ntBASIC9.57□□□□□ -0.88
IFT140Q96RY7 RPL10P14-201ENST00000565265 298 ntBASIC9.57□□□□□ -0.88
IFT140Q96RY7 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
IFT140Q96RY7 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC9.57□□□□□ -0.88
IFT140Q96RY7 AC010435.1-201ENST00000623353 1177 ntBASIC9.57□□□□□ -0.88
IFT140Q96RY7 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
IFT140Q96RY7 VCAN-208ENST00000512590 5923 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
IFT140Q96RY7 MKKS-201ENST00000347364 6714 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
IFT140Q96RY7 PRND-201ENST00000305817 3980 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
IFT140Q96RY7 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC9.56□□□□□ -0.88
IFT140Q96RY7 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
IFT140Q96RY7 ART4-201ENST00000228936 5129 ntAPPRIS P2 TSL 1 (best) BASIC9.56□□□□□ -0.88
IFT140Q96RY7 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC9.56□□□□□ -0.88
IFT140Q96RY7 PAK5-201ENST00000353224 4500 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
IFT140Q96RY7 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC9.56□□□□□ -0.88
IFT140Q96RY7 LINC01197-205ENST00000614853 1774 ntTSL 3 BASIC9.56□□□□□ -0.88
IFT140Q96RY7 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
IFT140Q96RY7 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
IFT140Q96RY7 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
IFT140Q96RY7 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC9.56□□□□□ -0.88
IFT140Q96RY7 AL360271.1-201ENST00000395679 510 ntBASIC9.56□□□□□ -0.88
IFT140Q96RY7 DUTP5-201ENST00000406790 469 ntBASIC9.56□□□□□ -0.88
IFT140Q96RY7 RNU6ATAC7P-201ENST00000408111 127 ntBASIC9.56□□□□□ -0.88
IFT140Q96RY7 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
IFT140Q96RY7 AC023141.8-201ENST00000442554 208 ntBASIC9.56□□□□□ -0.88
IFT140Q96RY7 AL022237.1-201ENST00000446663 358 ntBASIC9.56□□□□□ -0.88
IFT140Q96RY7 AL136981.1-203ENST00000451452 3844 ntBASIC9.56□□□□□ -0.88
IFT140Q96RY7 RPL23AP40-201ENST00000487630 390 ntBASIC9.56□□□□□ -0.88
IFT140Q96RY7 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC9.56□□□□□ -0.88
IFT140Q96RY7 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC9.56□□□□□ -0.88
IFT140Q96RY7 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC9.56□□□□□ -0.88
IFT140Q96RY7 AC087360.1-201ENST00000518788 616 ntBASIC9.56□□□□□ -0.88
IFT140Q96RY7 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
IFT140Q96RY7 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC9.56□□□□□ -0.88
IFT140Q96RY7 BLZF2P-201ENST00000553776 1130 ntBASIC9.56□□□□□ -0.88
IFT140Q96RY7 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC9.56□□□□□ -0.88
IFT140Q96RY7 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC9.56□□□□□ -0.88
IFT140Q96RY7 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
IFT140Q96RY7 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC9.56□□□□□ -0.88
IFT140Q96RY7 DAZ1-202ENST00000405239 4421 ntAPPRIS P5 TSL 1 (best) BASIC9.56□□□□□ -0.88
IFT140Q96RY7 ABCA11P-202ENST00000504019 2110 ntBASIC9.56□□□□□ -0.88
IFT140Q96RY7 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
IFT140Q96RY7 SOX5-202ENST00000381381 3991 ntTSL 5 BASIC9.56□□□□□ -0.88
IFT140Q96RY7 ANKRD36BP2-207ENST00000622311 5398 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
IFT140Q96RY7 NRXN1-248ENST00000636345 3595 ntTSL 5 BASIC9.56□□□□□ -0.88
IFT140Q96RY7 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
IFT140Q96RY7 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
IFT140Q96RY7 LINC00861-201ENST00000500989 5330 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
IFT140Q96RY7 AC006058.1-201ENST00000568686 5067 ntBASIC9.56□□□□□ -0.88
IFT140Q96RY7 HMGCR-209ENST00000511206 3395 ntAPPRIS P1 TSL 2 BASIC9.55□□□□□ -0.88
IFT140Q96RY7 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC9.55□□□□□ -0.88
IFT140Q96RY7 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
IFT140Q96RY7 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC9.55□□□□□ -0.88
IFT140Q96RY7 RAI14-228ENST00000515799 3486 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
IFT140Q96RY7 PARP14-202ENST00000474629 7915 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
IFT140Q96RY7 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC9.55□□□□□ -0.88
IFT140Q96RY7 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
IFT140Q96RY7 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
IFT140Q96RY7 AC074255.1-201ENST00000511259 501 ntBASIC9.55□□□□□ -0.88
IFT140Q96RY7 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC9.55□□□□□ -0.88
IFT140Q96RY7 BMPR1APS2-201ENST00000527904 1012 ntBASIC9.55□□□□□ -0.88
IFT140Q96RY7 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC9.55□□□□□ -0.88
IFT140Q96RY7 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC9.55□□□□□ -0.88
IFT140Q96RY7 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC9.55□□□□□ -0.88
IFT140Q96RY7 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC9.55□□□□□ -0.88
IFT140Q96RY7 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC9.55□□□□□ -0.88
IFT140Q96RY7 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC9.55□□□□□ -0.88
IFT140Q96RY7 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC9.55□□□□□ -0.88
IFT140Q96RY7 CR1-206ENST00000400960 6959 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
IFT140Q96RY7 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
IFT140Q96RY7 METTL8-217ENST00000612742 8132 ntAPPRIS P1 TSL 2 BASIC9.55□□□□□ -0.88
Retrieved 100 of 98,524 protein–RNA pairs in 67.3 ms