Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL6A3P12111 NLGN4X-201ENST00000275857 5454 ntAPPRIS P2 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL6A3P12111 SCP2-212ENST00000488965 3926 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
COL6A3P12111 HMGCR-209ENST00000511206 3395 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.48
COL6A3P12111 C14orf105-201ENST00000216445 3082 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.48
COL6A3P12111 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC5.84□□□□□ -1.48
COL6A3P12111 ARHGAP20-205ENST00000529591 2623 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
COL6A3P12111 RACGAP1-221ENST00000551016 2193 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
COL6A3P12111 AC104447.1-201ENST00000624214 2124 ntBASIC5.84□□□□□ -1.48
COL6A3P12111 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
COL6A3P12111 INTS2-201ENST00000251334 4255 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.48
COL6A3P12111 TSACC-201ENST00000368251 438 ntAPPRIS P1 TSL 3 BASIC5.83□□□□□ -1.48
COL6A3P12111 AC068481.1-201ENST00000415520 530 ntTSL 4 BASIC5.83□□□□□ -1.48
COL6A3P12111 AC013399.1-201ENST00000450311 418 ntBASIC5.83□□□□□ -1.48
COL6A3P12111 AC083829.1-201ENST00000503756 657 ntBASIC5.83□□□□□ -1.48
COL6A3P12111 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC5.83□□□□□ -1.48
COL6A3P12111 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC5.83□□□□□ -1.48
COL6A3P12111 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC5.83□□□□□ -1.48
COL6A3P12111 EDDM3DP-201ENST00000554692 434 ntBASIC5.83□□□□□ -1.48
COL6A3P12111 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC5.83□□□□□ -1.48
COL6A3P12111 LAPTM4BP2-201ENST00000604542 446 ntBASIC5.83□□□□□ -1.48
COL6A3P12111 AC006133.1-201ENST00000617106 264 ntBASIC5.83□□□□□ -1.48
COL6A3P12111 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
COL6A3P12111 AHCTF1-202ENST00000366508 8751 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
COL6A3P12111 POLR2J4-202ENST00000427076 6466 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL6A3P12111 ZC3H10-201ENST00000257940 7228 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL6A3P12111 SNRNP200-201ENST00000323853 7165 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL6A3P12111 RASGRP3-202ENST00000403687 4807 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL6A3P12111 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL6A3P12111 CYP4F30P-202ENST00000420048 405 ntBASIC5.83□□□□□ -1.48
COL6A3P12111 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC5.83□□□□□ -1.48
COL6A3P12111 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC5.83□□□□□ -1.48
COL6A3P12111 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC5.83□□□□□ -1.48
COL6A3P12111 TRIM6-205ENST00000445329 2951 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL6A3P12111 snoU13.24-201ENST00000458998 104 ntBASIC5.83□□□□□ -1.48
COL6A3P12111 DCN-209ENST00000546745 1026 ntTSL 3 BASIC5.83□□□□□ -1.48
COL6A3P12111 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC5.83□□□□□ -1.48
COL6A3P12111 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC5.83□□□□□ -1.48
COL6A3P12111 NPM1P42-201ENST00000560329 862 ntBASIC5.83□□□□□ -1.48
COL6A3P12111 MIR4737-201ENST00000583979 81 ntBASIC5.83□□□□□ -1.48
COL6A3P12111 ATP7B-201ENST00000242839 6638 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL6A3P12111 PRRC1-204ENST00000512635 2726 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL6A3P12111 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL6A3P12111 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
COL6A3P12111 CNTN4-AS1-201ENST00000442749 1640 ntTSL 3 BASIC5.83□□□□□ -1.48
COL6A3P12111 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
COL6A3P12111 NOTCH2-207ENST00000602566 5046 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL6A3P12111 OLMALINC-203ENST00000641087 3779 ntBASIC5.83□□□□□ -1.48
COL6A3P12111 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL6A3P12111 NRAP-203ENST00000369358 5534 ntAPPRIS ALT1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL6A3P12111 RN7SKP95-201ENST00000362860 303 ntBASIC5.83□□□□□ -1.48
COL6A3P12111 KNOP1P3-201ENST00000446933 426 ntBASIC5.83□□□□□ -1.48
COL6A3P12111 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC5.83□□□□□ -1.48
COL6A3P12111 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC5.83□□□□□ -1.48
COL6A3P12111 SNORA58-201ENST00000505219 137 ntBASIC5.83□□□□□ -1.48
COL6A3P12111 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL6A3P12111 VN1R85P-201ENST00000601587 426 ntBASIC5.83□□□□□ -1.48
COL6A3P12111 AF131215.7-201ENST00000602443 707 ntBASIC5.83□□□□□ -1.48
COL6A3P12111 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC5.83□□□□□ -1.48
COL6A3P12111 GOLGA6L22-204ENST00000622895 4178 ntAPPRIS P5 TSL 5 BASIC5.83□□□□□ -1.48
COL6A3P12111 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC5.83□□□□□ -1.48
COL6A3P12111 APOL3-203ENST00000397287 3626 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL6A3P12111 ADA2-203ENST00000399837 4505 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL6A3P12111 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL6A3P12111 SLC25A16-207ENST00000609923 6529 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL6A3P12111 CLTCL1-202ENST00000427926 5513 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL6A3P12111 BEND2-202ENST00000380033 4611 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL6A3P12111 COL6A3-201ENST00000295550 10749 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL6A3P12111 LEPR-203ENST00000371058 2805 ntTSL 5 BASIC5.83□□□□□ -1.48
COL6A3P12111 FAM13A-202ENST00000395002 4945 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL6A3P12111 RRS1-AS1-201ENST00000499642 4366 ntTSL 2 BASIC5.82□□□□□ -1.48
COL6A3P12111 ERN1-201ENST00000433197 7876 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL6A3P12111 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL6A3P12111 MYH8-201ENST00000403437 6041 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
COL6A3P12111 ABCA11P-202ENST00000504019 2110 ntBASIC5.82□□□□□ -1.48
COL6A3P12111 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL6A3P12111 IL22RA2-203ENST00000349184 2801 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL6A3P12111 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC5.82□□□□□ -1.48
COL6A3P12111 C1orf105-204ENST00000460397 462 ntTSL 3 BASIC5.82□□□□□ -1.48
COL6A3P12111 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC5.82□□□□□ -1.48
COL6A3P12111 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL6A3P12111 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC5.82□□□□□ -1.48
COL6A3P12111 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL6A3P12111 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC5.82□□□□□ -1.48
COL6A3P12111 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL6A3P12111 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC5.82□□□□□ -1.48
COL6A3P12111 AC133552.1-201ENST00000569988 4007 ntBASIC5.82□□□□□ -1.48
COL6A3P12111 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC5.82□□□□□ -1.48
COL6A3P12111 AL512310.3-201ENST00000547023 1335 ntBASIC5.82□□□□□ -1.48
COL6A3P12111 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL6A3P12111 SUPT20H-224ENST00000542180 2478 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
COL6A3P12111 RPL12P28-201ENST00000430852 489 ntBASIC5.82□□□□□ -1.48
COL6A3P12111 NPM1P33-201ENST00000438918 872 ntBASIC5.82□□□□□ -1.48
COL6A3P12111 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC5.82□□□□□ -1.48
COL6A3P12111 AC138701.1-201ENST00000524329 714 ntBASIC5.82□□□□□ -1.48
COL6A3P12111 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC5.82□□□□□ -1.48
COL6A3P12111 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL6A3P12111 RNF41-212ENST00000615206 5216 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
COL6A3P12111 HS6ST3-202ENST00000620595 7073 ntBASIC5.82□□□□□ -1.48
COL6A3P12111 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 216.7 ms