Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC5.66□□□□□ -1.5
HOXD4P09016 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC5.66□□□□□ -1.5
HOXD4P09016 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC5.66□□□□□ -1.5
HOXD4P09016 AC092266.1-201ENST00000610958 165 ntBASIC5.66□□□□□ -1.5
HOXD4P09016 AC024884.1-201ENST00000620583 399 ntBASIC5.66□□□□□ -1.5
HOXD4P09016 AL512356.3-201ENST00000623005 461 ntBASIC5.66□□□□□ -1.5
HOXD4P09016 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC5.66□□□□□ -1.5
HOXD4P09016 LINC02341-202ENST00000637462 1295 ntTSL 5 BASIC5.66□□□□□ -1.5
HOXD4P09016 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
HOXD4P09016 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
HOXD4P09016 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC5.66□□□□□ -1.5
HOXD4P09016 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
HOXD4P09016 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
HOXD4P09016 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC5.66□□□□□ -1.5
HOXD4P09016 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
HOXD4P09016 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC5.66□□□□□ -1.5
HOXD4P09016 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.66□□□□□ -1.5
HOXD4P09016 USP40-202ENST00000409945 1946 ntTSL 2 BASIC5.66□□□□□ -1.5
HOXD4P09016 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC5.66□□□□□ -1.5
HOXD4P09016 USP50-203ENST00000532404 1386 ntAPPRIS P2 TSL 5 BASIC5.66□□□□□ -1.5
HOXD4P09016 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.66□□□□□ -1.5
HOXD4P09016 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
HOXD4P09016 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
HOXD4P09016 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC5.65□□□□□ -1.5
HOXD4P09016 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC5.65□□□□□ -1.5
HOXD4P09016 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
HOXD4P09016 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.5
HOXD4P09016 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
HOXD4P09016 KARSP1-201ENST00000451871 1752 ntBASIC5.65□□□□□ -1.5
HOXD4P09016 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC5.65□□□□□ -1.5
HOXD4P09016 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
HOXD4P09016 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
HOXD4P09016 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
HOXD4P09016 MTCO1P28-201ENST00000574177 1528 ntBASIC5.65□□□□□ -1.5
HOXD4P09016 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC5.65□□□□□ -1.5
HOXD4P09016 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
HOXD4P09016 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
HOXD4P09016 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
HOXD4P09016 ECHDC1-202ENST00000368289 909 ntTSL 5 BASIC5.65□□□□□ -1.5
HOXD4P09016 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
HOXD4P09016 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
HOXD4P09016 CCL20-202ENST00000409189 839 ntAPPRIS ALT1 TSL 1 (best) BASIC5.65□□□□□ -1.5
HOXD4P09016 RN7SKP108-201ENST00000411367 328 ntBASIC5.65□□□□□ -1.5
HOXD4P09016 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC5.65□□□□□ -1.5
HOXD4P09016 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC5.65□□□□□ -1.5
HOXD4P09016 AC104843.2-201ENST00000427666 297 ntBASIC5.65□□□□□ -1.5
HOXD4P09016 AL590004.3-202ENST00000445883 451 ntBASIC5.65□□□□□ -1.5
HOXD4P09016 PPIAP27-201ENST00000453800 265 ntBASIC5.65□□□□□ -1.5
HOXD4P09016 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC5.65□□□□□ -1.5
HOXD4P09016 SLC25A51P1-201ENST00000468432 871 ntBASIC5.65□□□□□ -1.5
HOXD4P09016 AC090602.1-201ENST00000469695 252 ntBASIC5.65□□□□□ -1.5
HOXD4P09016 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC5.65□□□□□ -1.5
HOXD4P09016 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC5.65□□□□□ -1.5
HOXD4P09016 BLNK-209ENST00000495266 440 ntTSL 5 BASIC5.65□□□□□ -1.5
HOXD4P09016 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC5.65□□□□□ -1.5
HOXD4P09016 AC090958.1-201ENST00000511122 351 ntBASIC5.65□□□□□ -1.5
HOXD4P09016 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC5.65□□□□□ -1.5
HOXD4P09016 RNA5SP206-201ENST00000516703 121 ntBASIC5.65□□□□□ -1.5
HOXD4P09016 OR5D2P-201ENST00000524390 911 ntBASIC5.65□□□□□ -1.5
HOXD4P09016 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
HOXD4P09016 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC5.65□□□□□ -1.5
HOXD4P09016 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC5.65□□□□□ -1.5
HOXD4P09016 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC5.65□□□□□ -1.5
HOXD4P09016 SETP3-201ENST00000581726 813 ntBASIC5.65□□□□□ -1.5
HOXD4P09016 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
HOXD4P09016 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC5.65□□□□□ -1.5
HOXD4P09016 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC5.65□□□□□ -1.5
HOXD4P09016 AC011445.2-201ENST00000599274 173 ntBASIC5.65□□□□□ -1.5
HOXD4P09016 AL953862.2-201ENST00000603089 820 ntBASIC5.65□□□□□ -1.5
HOXD4P09016 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC5.65□□□□□ -1.5
HOXD4P09016 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC5.65□□□□□ -1.5
HOXD4P09016 TCL6_3.1-201ENST00000619064 137 ntBASIC5.65□□□□□ -1.5
HOXD4P09016 MIR7159-201ENST00000620587 66 ntBASIC5.65□□□□□ -1.5
HOXD4P09016 MRPL57P1-201ENST00000621486 265 ntBASIC5.65□□□□□ -1.5
HOXD4P09016 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
HOXD4P09016 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
HOXD4P09016 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
HOXD4P09016 AC092451.3-201ENST00000625067 1343 ntBASIC5.65□□□□□ -1.51
HOXD4P09016 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
HOXD4P09016 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
HOXD4P09016 FBXW12-204ENST00000445170 1379 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
HOXD4P09016 AC109446.4-201ENST00000623235 2755 ntBASIC5.65□□□□□ -1.51
HOXD4P09016 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC5.65□□□□□ -1.51
HOXD4P09016 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC5.65□□□□□ -1.51
HOXD4P09016 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HOXD4P09016 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HOXD4P09016 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
HOXD4P09016 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC5.64□□□□□ -1.51
HOXD4P09016 AC004158.1-201ENST00000564508 4319 ntBASIC5.64□□□□□ -1.51
HOXD4P09016 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HOXD4P09016 TCF12-205ENST00000537840 1598 ntTSL 2 BASIC5.64□□□□□ -1.51
HOXD4P09016 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HOXD4P09016 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
HOXD4P09016 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.64□□□□□ -1.51
HOXD4P09016 LINC02019-201ENST00000608605 2060 ntBASIC5.64□□□□□ -1.51
HOXD4P09016 ZCCHC6-202ENST00000375947 611 ntTSL 5 BASIC5.64□□□□□ -1.51
HOXD4P09016 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HOXD4P09016 TANK-203ENST00000402568 878 ntTSL 5 BASIC5.64□□□□□ -1.51
HOXD4P09016 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC5.64□□□□□ -1.51
HOXD4P09016 SLC20A1P1-201ENST00000413906 956 ntBASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms