Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 ST8SIA5-203ENST00000538168 13761 ntTSL 2 BASIC7.31□□□□□ -1.24
CCDC88AQ3V6T2 RAPGEF4-214ENST00000538974 3920 ntTSL 2 BASIC7.31□□□□□ -1.24
CCDC88AQ3V6T2 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
CCDC88AQ3V6T2 SIAH3-201ENST00000400405 7057 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
CCDC88AQ3V6T2 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
CCDC88AQ3V6T2 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC7.31□□□□□ -1.24
CCDC88AQ3V6T2 RN7SKP103-201ENST00000363848 320 ntBASIC7.31□□□□□ -1.24
CCDC88AQ3V6T2 MIR550A3-201ENST00000390735 95 ntBASIC7.31□□□□□ -1.24
CCDC88AQ3V6T2 RN7SKP273-201ENST00000411392 314 ntBASIC7.31□□□□□ -1.24
CCDC88AQ3V6T2 TNPO1P1-201ENST00000423641 1138 ntBASIC7.31□□□□□ -1.24
CCDC88AQ3V6T2 FABP5P2-201ENST00000439042 408 ntBASIC7.31□□□□□ -1.24
CCDC88AQ3V6T2 RPSAP50-201ENST00000481955 852 ntBASIC7.31□□□□□ -1.24
CCDC88AQ3V6T2 RPS4XP1-201ENST00000482189 787 ntBASIC7.31□□□□□ -1.24
CCDC88AQ3V6T2 OR4A40P-201ENST00000533878 948 ntBASIC7.31□□□□□ -1.24
CCDC88AQ3V6T2 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC7.31□□□□□ -1.24
CCDC88AQ3V6T2 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC7.31□□□□□ -1.24
CCDC88AQ3V6T2 RN7SL708P-201ENST00000580952 299 ntBASIC7.31□□□□□ -1.24
CCDC88AQ3V6T2 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC7.31□□□□□ -1.24
CCDC88AQ3V6T2 AL355377.1-201ENST00000621125 1653 ntBASIC7.31□□□□□ -1.24
CCDC88AQ3V6T2 RTL9-201ENST00000465301 5426 ntAPPRIS P2 TSL 1 (best) BASIC7.31□□□□□ -1.24
CCDC88AQ3V6T2 LRRTM3-201ENST00000361320 4358 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
CCDC88AQ3V6T2 ZNF462-201ENST00000277225 10414 ntAPPRIS P2 TSL 1 (best) BASIC7.31□□□□□ -1.24
CCDC88AQ3V6T2 ZYG11B-201ENST00000294353 8093 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 METTL15P3-201ENST00000415522 1221 ntBASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 AC093763.2-201ENST00000505334 1223 ntBASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 AC110775.1-201ENST00000513721 462 ntBASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 CDH12P4-201ENST00000517835 295 ntBASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 CDH12P3-201ENST00000517935 295 ntBASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 CDH12P1-201ENST00000518435 295 ntBASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 MINCR-206ENST00000524335 499 ntTSL 2 BASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 AC067852.5-201ENST00000589299 310 ntBASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 MIR8080-201ENST00000622224 89 ntBASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 AC089998.1-201ENST00000548575 3141 ntBASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 LINC01963-201ENST00000562038 3148 ntBASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 DTNA-204ENST00000348997 4518 ntAPPRIS P3 TSL 1 (best) BASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 TRPM3-208ENST00000377105 5957 ntAPPRIS ALT2 TSL 5 BASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 NFIA-201ENST00000357977 3200 ntTSL 2 BASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 ALS2-201ENST00000264276 6644 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 ATOX1-203ENST00000521264 4341 ntTSL 2 BASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 RN7SKP128-201ENST00000364270 303 ntBASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 NME1P1-201ENST00000420914 382 ntBASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 ELOCP3-201ENST00000439303 348 ntBASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 AC245047.2-201ENST00000441060 530 ntBASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 AL606490.8-201ENST00000441624 319 ntBASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 AC104164.1-201ENST00000460282 590 ntBASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 RPS3AP15-201ENST00000483874 781 ntBASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 RN7SL57P-201ENST00000493687 290 ntBASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 AC093890.1-201ENST00000502554 540 ntBASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 COL21A1-203ENST00000370819 4094 ntAPPRIS ALT1 TSL 1 (best) BASIC7.3□□□□□ -1.24
CCDC88AQ3V6T2 SOD2-211ENST00000538183 14266 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
CCDC88AQ3V6T2 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC7.29□□□□□ -1.24
CCDC88AQ3V6T2 HYAL4-202ENST00000476325 1616 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
CCDC88AQ3V6T2 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
CCDC88AQ3V6T2 OR2T33-202ENST00000641220 4118 ntAPPRIS P1 BASIC7.29□□□□□ -1.24
CCDC88AQ3V6T2 MGAM-209ENST00000620571 6483 ntTSL 5 BASIC7.29□□□□□ -1.24
CCDC88AQ3V6T2 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC7.29□□□□□ -1.24
CCDC88AQ3V6T2 SLC23A2-202ENST00000379333 6962 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
CCDC88AQ3V6T2 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC7.29□□□□□ -1.24
CCDC88AQ3V6T2 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC7.29□□□□□ -1.24
CCDC88AQ3V6T2 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC7.29□□□□□ -1.24
CCDC88AQ3V6T2 AL022331.1-201ENST00000429025 477 ntBASIC7.29□□□□□ -1.24
CCDC88AQ3V6T2 RPS27AP3-201ENST00000453803 454 ntBASIC7.29□□□□□ -1.24
CCDC88AQ3V6T2 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC7.29□□□□□ -1.24
CCDC88AQ3V6T2 IGLV3-30-201ENST00000524362 298 ntBASIC7.29□□□□□ -1.24
CCDC88AQ3V6T2 AL445528.2-201ENST00000620582 470 ntBASIC7.29□□□□□ -1.24
CCDC88AQ3V6T2 AC119674.1-213ENST00000641177 1386 ntBASIC7.29□□□□□ -1.24
CCDC88AQ3V6T2 AL627309.5-201ENST00000484859 4860 ntTSL 5 BASIC7.29□□□□□ -1.24
CCDC88AQ3V6T2 SPA17-204ENST00000532692 4949 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
CCDC88AQ3V6T2 ZNF812P-201ENST00000457674 1694 ntBASIC7.29□□□□□ -1.24
CCDC88AQ3V6T2 FAM227A-205ENST00000535113 10322 ntAPPRIS ALT2 TSL 5 BASIC7.29□□□□□ -1.24
CCDC88AQ3V6T2 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 TIAM2-208ENST00000461783 6981 ntAPPRIS P1 TSL 2 BASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 SCIN-201ENST00000297029 9713 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 RAB6C-AS1-201ENST00000412425 2454 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms