Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 MIR1284-201ENST00000408337 120 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 AC064874.1-201ENST00000409661 441 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 EMX2OS-201ENST00000412075 1025 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 OR10U1P-201ENST00000414690 905 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 RPL23AP39-201ENST00000415533 405 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 AK4P4-201ENST00000419465 646 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 CLEC1A-203ENST00000420265 1165 ntAPPRIS ALT2 TSL 2 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 CDC42P6-201ENST00000421246 576 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 AL590729.1-201ENST00000427046 573 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 AC104651.1-201ENST00000427559 735 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 RPE-205ENST00000429907 925 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 AL513175.1-201ENST00000431492 780 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 MYO5BP3-201ENST00000431872 1279 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 LINC00460-201ENST00000435024 631 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 AC242426.1-201ENST00000435270 960 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 AL645568.1-202ENST00000437190 1016 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 UBE2V1P3-201ENST00000439651 417 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 YWHAQP9-201ENST00000445891 512 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 AL161454.1-201ENST00000446226 569 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 TPT1P7-201ENST00000458300 517 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 GCSAM-202ENST00000460387 623 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 AL035660.2-201ENST00000461248 556 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 RN7SL36P-201ENST00000469345 276 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 AC087385.2-201ENST00000477729 498 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 AC015724.1-201ENST00000478577 156 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 ALG13-214ENST00000482742 620 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 RN7SL335P-201ENST00000482790 304 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 FTH1P23-201ENST00000492727 550 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 BNIP3P41-201ENST00000503774 571 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 AC022639.1-201ENST00000523191 573 ntTSL 4 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 AL355075.1-201ENST00000528210 468 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 AC090458.1-202ENST00000530387 462 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 AC099687.1-201ENST00000531798 510 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 HTATIP2-207ENST00000532081 774 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 AC004217.3-201ENST00000551552 878 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 PSMB7P1-201ENST00000556349 514 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 AC013457.1-201ENST00000556770 1011 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 HNRNPA1P74-201ENST00000560782 835 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 AC073657.1-202ENST00000562063 334 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 AC027796.5-201ENST00000573568 560 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 ZNF85-206ENST00000596476 1259 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 AC091805.2-201ENST00000603848 235 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 AL049829.3-202ENST00000604278 711 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 AP002360.4-201ENST00000606980 481 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 Metazoa_SRP.124-201ENST00000610352 345 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 5S_rRNA.20-201ENST00000612104 118 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 uc_338.9-201ENST00000617424 182 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 MIR6723-201ENST00000621981 89 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 AC012414.7-202ENST00000622705 1090 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 AC079456.1-201ENST00000624010 480 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 OR9K2-204ENST00000641374 1122 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 THAP12P7-201ENST00000520248 2290 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 SEMA6A-210ENST00000510263 3292 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 RNASE9-209ENST00000557068 2703 ntAPPRIS P3 TSL 2 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 AC004023.1-201ENST00000561473 1744 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 AC012020.1-201ENST00000624541 1728 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 AP1G1-201ENST00000299980 6969 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 ZMYND8-216ENST00000471951 4053 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 NCOA4-204ENST00000581486 3549 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 AC092447.7-201ENST00000422212 1621 ntBASIC5.98□□□□□ -1.45
CCDC140Q96MF4 LDB3-201ENST00000263066 3873 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 SLC17A3-203ENST00000361703 1543 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 PDE1A-201ENST00000351439 2338 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 LRRC37A-201ENST00000320254 5177 ntAPPRIS P2 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 SOX6-211ENST00000528429 2656 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 KCNJ15-220ENST00000612702 3046 ntAPPRIS P1 TSL 4 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 OR10K2-202ENST00000641042 3023 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 PTPN2-212ENST00000591497 3390 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 CTNND1-222ENST00000529919 4780 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 MYOCD-201ENST00000343344 2817 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC140Q96MF4 AGL-201ENST00000294724 7446 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 ZHX3-211ENST00000544979 3933 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 ASAH1-203ENST00000381733 2512 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 FBXO36-202ENST00000373652 3120 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 OR10W1-201ENST00000395079 1469 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 AL391261.1-201ENST00000555712 1479 ntBASIC5.97□□□□□ -1.45
CCDC140Q96MF4 CASP12-212ENST00000613512 1451 ntAPPRIS P5 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 AC009948.5-201ENST00000624360 4406 ntBASIC5.97□□□□□ -1.45
CCDC140Q96MF4 PPP1R1C-202ENST00000409137 3004 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 SLC24A1-209ENST00000537259 3983 ntAPPRIS ALT2 TSL 2 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 AC016831.3-201ENST00000446451 1723 ntBASIC5.97□□□□□ -1.45
CCDC140Q96MF4 WDR64-204ENST00000437684 2310 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 CAP1-201ENST00000340450 2592 ntAPPRIS ALT1 TSL 5 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 TMEM138-209ENST00000542946 2839 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 DCLRE1C-206ENST00000378254 2485 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms