RNA–Protein interactions for RNA: ENST00000263066.10

LDB3-201, Transcript of LIM domain binding 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDB3, Length 3,873 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-201ENST00000263066 NISCHQ9Y2I1 1504 aa15.89■□□□□ 0.14
LDB3-201ENST00000263066 DCAF8L2P0C7V8 631 aa15.21■□□□□ 0.03
LDB3-201ENST00000263066 PELP1Q8IZL8 1130 aaKnown RBP14.41□□□□□ -0.1
LDB3-201ENST00000263066 SHROOM4Q9ULL8 1493 aa14.26□□□□□ -0.13
LDB3-201ENST00000263066 MYT1Q01538 1121 aa14.11□□□□□ -0.15
LDB3-201ENST00000263066 SUPT5HO00267 1087 aaKnown RBP13.94□□□□□ -0.18
LDB3-201ENST00000263066 ABCC9O60706 1549 aa13.81□□□□□ -0.2
LDB3-201ENST00000263066 CCDC180Q9P1Z9 1646 aa13.79□□□□□ -0.2
LDB3-201ENST00000263066 HRCP23327 699 aa13.65□□□□□ -0.23
LDB3-201ENST00000263066 PPARGC1BQ86YN6 1023 aaKnown RBP13.57□□□□□ -0.24
LDB3-201ENST00000263066 PABPN1Q86U42 306 aaKnown RBP eCLIP13.55□□□□□ -0.24
LDB3-201ENST00000263066 EHMT2Q96KQ7 1210 aa13.53□□□□□ -0.24
LDB3-201ENST00000263066 PCGF6Q9BYE7 350 aa13.51□□□□□ -0.25
LDB3-201ENST00000263066 ZCCHC6Q5VYS8 1495 aaKnown RBP13.47□□□□□ -0.25
LDB3-201ENST00000263066 SCAF1Q9H7N4 1312 aaKnown RBP13.27□□□□□ -0.29
LDB3-201ENST00000263066 TTBK1Q5TCY1 1321 aaPredicted RBP13.21□□□□□ -0.3
LDB3-201ENST00000263066 FAM9AQ8IZU1 332 aaPredicted RBP13.15□□□□□ -0.3
LDB3-201ENST00000263066 DCAF1Q9Y4B6 1507 aa13.11□□□□□ -0.31
LDB3-201ENST00000263066 CENPBP07199 599 aaPredicted RBP13.1□□□□□ -0.31
LDB3-201ENST00000263066 BCL11AQ9H165 835 aa13.03□□□□□ -0.32
LDB3-201ENST00000263066 GTF3C3Q9Y5Q9 886 aa13.02□□□□□ -0.33
LDB3-201ENST00000263066 RANGAP1P46060 587 aaPredicted RBP13.01□□□□□ -0.33
LDB3-201ENST00000263066 UNC13AQ9UPW8 1703 aa12.96□□□□□ -0.34
LDB3-201ENST00000263066 ERICH6Q7L0X2 663 aa12.93□□□□□ -0.34
LDB3-201ENST00000263066 PRKCSHP14314 528 aaPredicted RBP12.89□□□□□ -0.35
LDB3-201ENST00000263066 ACIN1Q9UKV3 1341 aaKnown RBP12.88□□□□□ -0.35
LDB3-201ENST00000263066 SCRIBQ14160 1630 aa12.86□□□□□ -0.35
LDB3-201ENST00000263066 MYO15BQ96JP2 1530 aa12.84□□□□□ -0.35
LDB3-201ENST00000263066 YTHDC1Q96MU7 727 aaKnown RBP12.84□□□□□ -0.35
LDB3-201ENST00000263066 ZEB1P37275 1124 aaPredicted RBP12.82□□□□□ -0.36
LDB3-201ENST00000263066 NEUROD1Q13562 356 aa12.8□□□□□ -0.36
LDB3-201ENST00000263066 TRIM41Q8WV44 630 aa12.75□□□□□ -0.37
LDB3-201ENST00000263066 ATP1B4Q9UN42 357 aaPredicted RBP12.62□□□□□ -0.39
LDB3-201ENST00000263066 BICRAQ9NZM4 1560 aa12.61□□□□□ -0.39
LDB3-201ENST00000263066 TRIM26Q12899 539 aaPredicted RBP12.6□□□□□ -0.39
LDB3-201ENST00000263066 NACADO15069 1562 aa12.58□□□□□ -0.4
LDB3-201ENST00000263066 ANP32EQ9BTT0 268 aa12.56□□□□□ -0.4
LDB3-201ENST00000263066 RB1CC1Q8TDY2 1594 aa12.55□□□□□ -0.4
LDB3-201ENST00000263066 UBTFP17480 764 aaKnown RBP12.54□□□□□ -0.4
LDB3-201ENST00000263066 CECR2Q9BXF3 1484 aa12.51□□□□□ -0.41
LDB3-201ENST00000263066 LOC105371045A0A1W2PR82 267 aa12.51□□□□□ -0.41
LDB3-201ENST00000263066 DIEXFQ68CQ4 756 aaKnown RBP12.51□□□□□ -0.41
LDB3-201ENST00000263066 FBLN2P98095 1184 aa12.48□□□□□ -0.41
LDB3-201ENST00000263066 EIF4G1Q04637 1599 aaKnown RBP12.47□□□□□ -0.41
LDB3-201ENST00000263066 CCER1Q8TC90 406 aaPredicted RBP12.46□□□□□ -0.41
LDB3-201ENST00000263066 CSRNP3Q8WYN3 585 aa12.45□□□□□ -0.42
LDB3-201ENST00000263066 MROH2BQ7Z745 1585 aa12.44□□□□□ -0.42
LDB3-201ENST00000263066 CHIC1Q5VXU3 224 aa12.44□□□□□ -0.42
LDB3-201ENST00000263066 WIZO95785 1651 aa12.43□□□□□ -0.42
LDB3-201ENST00000263066 RSF1Q96T23 1441 aaPredicted RBP12.41□□□□□ -0.42
LDB3-201ENST00000263066 APLP2Q06481 763 aa12.31□□□□□ -0.44
LDB3-201ENST00000263066 DNAJC5BQ9UF47 199 aa12.31□□□□□ -0.44
LDB3-201ENST00000263066 ARID3CA6NKF2 412 aa12.3□□□□□ -0.44
LDB3-201ENST00000263066 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.3□□□□□ -0.44
LDB3-201ENST00000263066 HNRNPUL2Q1KMD3 747 aaKnown RBP12.3□□□□□ -0.44
LDB3-201ENST00000263066 BCANQ96GW7 911 aa12.26□□□□□ -0.45
LDB3-201ENST00000263066 SMARCA4P51532 1647 aa12.24□□□□□ -0.45
LDB3-201ENST00000263066 P3H3Q8IVL6 736 aa12.24□□□□□ -0.45
LDB3-201ENST00000263066 BAZ1AQ9NRL2 1556 aaPredicted RBP12.22□□□□□ -0.45
LDB3-201ENST00000263066 EIF5BO60841 1220 aaKnown RBP12.21□□□□□ -0.45
LDB3-201ENST00000263066 ANO8Q9HCE9 1232 aaPredicted RBP12.19□□□□□ -0.46
LDB3-201ENST00000263066 PEG3Q9GZU2 1588 aa12.19□□□□□ -0.46
LDB3-201ENST00000263066 CCDC136Q96JN2 1154 aa12.17□□□□□ -0.46
LDB3-201ENST00000263066 ITGAEP38570 1179 aa12.15□□□□□ -0.46
LDB3-201ENST00000263066 BAZ1BQ9UIG0 1483 aaKnown RBP12.12□□□□□ -0.47
LDB3-201ENST00000263066 NEFLP07196 543 aa12.11□□□□□ -0.47
LDB3-201ENST00000263066 SMARCA2P51531 1590 aa12.11□□□□□ -0.47
LDB3-201ENST00000263066 TSHZ2Q9NRE2 1034 aa12.07□□□□□ -0.48
LDB3-201ENST00000263066 SLC24A1O60721 1099 aa12.07□□□□□ -0.48
LDB3-201ENST00000263066 MYT1LQ9UL68 1186 aa12.07□□□□□ -0.48
LDB3-201ENST00000263066 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.06□□□□□ -0.48
LDB3-201ENST00000263066 RTN4Q9NQC3 1192 aaKnown RBP12.06□□□□□ -0.48
LDB3-201ENST00000263066 TOP2AP11388 1531 aaKnown RBP12.03□□□□□ -0.48
LDB3-201ENST00000263066 ERCC6Q03468 1493 aa12.02□□□□□ -0.49
LDB3-201ENST00000263066 SUPT16HQ9Y5B9 1047 aaKnown RBP12□□□□□ -0.49
LDB3-201ENST00000263066 RTL5Q5HYW3 569 aaPredicted RBP11.99□□□□□ -0.49
LDB3-201ENST00000263066 ZNF316A6NFI3 1004 aaPredicted RBP11.98□□□□□ -0.49
LDB3-201ENST00000263066 MIER1Q8N108 512 aa11.98□□□□□ -0.49
LDB3-201ENST00000263066 CCDC88BA6NC98 1476 aa11.97□□□□□ -0.49
LDB3-201ENST00000263066 DEKP35659 375 aaKnown RBP11.97□□□□□ -0.49
LDB3-201ENST00000263066 NBR1Q14596 966 aa11.97□□□□□ -0.49
LDB3-201ENST00000263066 SALL2Q9Y467 1007 aaPredicted RBP11.95□□□□□ -0.5
LDB3-201ENST00000263066 CHMP7Q8WUX9 453 aaPredicted RBP11.94□□□□□ -0.5
LDB3-201ENST00000263066 ABCC8Q09428 1581 aa11.91□□□□□ -0.5
LDB3-201ENST00000263066 FKBP8Q14318 412 aa11.9□□□□□ -0.5
LDB3-201ENST00000263066 ATAD2BQ9ULI0 1458 aa11.9□□□□□ -0.5
LDB3-201ENST00000263066 RBM19Q9Y4C8 960 aaKnown RBP11.87□□□□□ -0.51
LDB3-201ENST00000263066 CLSPNQ9HAW4 1339 aa11.86□□□□□ -0.51
LDB3-201ENST00000263066 TDRD9Q8NDG6 1382 aaKnown RBP11.85□□□□□ -0.51
LDB3-201ENST00000263066 PLPPR3Q6T4P5 718 aa11.85□□□□□ -0.51
LDB3-201ENST00000263066 PKNOX2Q96KN3 472 aa11.84□□□□□ -0.51
LDB3-201ENST00000263066 GLIPR1L2Q4G1C9 344 aa11.83□□□□□ -0.52
LDB3-201ENST00000263066 PODXL2Q9NZ53 605 aa11.83□□□□□ -0.52
LDB3-201ENST00000263066 NESP48681 1621 aa11.82□□□□□ -0.52
LDB3-201ENST00000263066 SYNJ1O43426 1573 aa11.81□□□□□ -0.52
LDB3-201ENST00000263066 FAM50AQ14320 339 aaKnown RBP11.81□□□□□ -0.52
LDB3-201ENST00000263066 CDK11AQ9UQ88 783 aaPredicted RBP11.81□□□□□ -0.52
LDB3-201ENST00000263066 WRNQ14191 1432 aaPredicted RBP eCLIP11.81□□□□□ -0.52
LDB3-201ENST00000263066 ZNF777Q9ULD5 760 aaPredicted RBP11.8□□□□□ -0.52
LDB3-201ENST00000263066 UBE2Q2Q8WVN8 375 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms