Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 FBXW7-204ENST00000393956 1735 ntTSL 2 BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 USP3-208ENST00000558285 1742 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 ANKRD27-201ENST00000306065 4450 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 BCO2-201ENST00000357685 2930 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 EEF1A1P22-201ENST00000559385 1380 ntBASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 CRIPT-201ENST00000238892 1953 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 SIRPD-202ENST00000381623 1958 ntAPPRIS P2 TSL 1 (best) BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 MTTP-208ENST00000511045 3154 ntTSL 2 BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 C4BPA-201ENST00000367070 2243 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 BCO2-214ENST00000532593 1647 ntTSL 2 BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 IRAK4-214ENST00000613694 4280 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 BCAS1-202ENST00000395961 3303 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 TTC26-202ENST00000430935 4198 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 MGP-201ENST00000228938 694 ntTSL 3 BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 CLEC4A-202ENST00000345999 841 ntTSL 5 BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 IL4-202ENST00000350025 414 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 RNA5SP483-201ENST00000363431 118 ntBASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 IGLV1-51-201ENST00000390290 389 ntAPPRIS P1 BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 SRSF7-202ENST00000409276 1050 ntTSL 5 BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 RNU2-8P-201ENST00000410727 190 ntBASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 STSP1-201ENST00000412493 1151 ntBASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 RAD23BP1-201ENST00000421404 1227 ntBASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 AC106017.1-202ENST00000424109 428 ntTSL 5 BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 NIPA2P1-201ENST00000426223 976 ntBASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 AC244034.1-201ENST00000428027 792 ntBASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 AL139220.2-213ENST00000431800 674 ntTSL 3 BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 AC007952.3-202ENST00000435028 428 ntTSL 5 BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 MRPL22-202ENST00000439747 784 ntTSL 2 BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 DSCAM-IT1-201ENST00000440363 720 ntTSL 3 BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 AC239798.3-201ENST00000454459 408 ntBASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 AC069213.3-201ENST00000454858 474 ntBASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 NDUFB4P1-201ENST00000462398 381 ntBASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 AC135721.2-201ENST00000464237 300 ntBASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 H3F3AP5-201ENST00000475267 429 ntBASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 AC135999.1-201ENST00000478962 479 ntBASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 IGKV1-16-201ENST00000479981 378 ntAPPRIS P1 BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 AF186996.3-201ENST00000509527 964 ntBASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 CDV3-208ENST00000511392 554 ntTSL 5 BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 RNU6-835P-201ENST00000516974 104 ntBASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 AC021001.1-201ENST00000518703 987 ntBASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 SMAD3-203ENST00000537194 1147 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 AC007375.1-201ENST00000554513 578 ntBASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 GTF2IP8-201ENST00000560687 584 ntBASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 AC005722.3-201ENST00000580884 446 ntTSL 3 BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 AL589863.1-201ENST00000595383 631 ntBASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 AL596327.1-201ENST00000603629 213 ntBASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 AC090510.2-201ENST00000617465 629 ntBASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 NAA50-211ENST00000630058 177 ntTSL 5 BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 AP000473.2-201ENST00000602659 1537 ntBASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 DYNLT1-202ENST00000367088 2891 ntTSL 2 BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 CFAP57-201ENST00000372492 4244 ntAPPRIS P1 TSL 5 BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 SNCAIP-201ENST00000261367 4986 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 COX10-AS1-201ENST00000423323 3000 ntTSL 2 BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 ANXA2-204ENST00000451270 1435 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 PTGS2-201ENST00000367468 4514 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 LINC02436-202ENST00000509017 2186 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 EPB41-202ENST00000347529 2676 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 UBAP2L-202ENST00000343815 3411 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 MS4A6A-208ENST00000528851 1806 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 UGT2B24P-201ENST00000514441 1597 ntBASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 RFX3-202ENST00000358730 2971 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 PROX2-202ENST00000556489 3878 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 STRADA-233ENST00000638888 1718 ntTSL 5 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 DUXAP8-203ENST00000437781 2398 ntTSL 2 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 LIMCH1-216ENST00000512820 5071 ntAPPRIS ALT2 TSL 1 (best) BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 LIPA-203ENST00000371837 2513 ntTSL 2 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 CLDN2-203ENST00000541806 3150 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 GRHL1-201ENST00000324907 3563 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 ZSCAN5B-201ENST00000358992 1626 ntAPPRIS P1 TSL 5 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 TRMT10A-202ENST00000394876 1638 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 CASP7-207ENST00000452490 2271 ntTSL 2 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 AC131935.2-201ENST00000623649 1371 ntBASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 MTERF4-222ENST00000614476 4524 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 SEPT4-202ENST00000317268 1784 ntAPPRIS P4 TSL 1 (best) BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 IGSF22-205ENST00000513874 4284 ntAPPRIS P1 TSL 5 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 DCLRE1C-203ENST00000378242 1933 ntTSL 2 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 CPA4-202ENST00000445470 2718 ntTSL 2 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 PTPRD-204ENST00000397606 5038 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 PTPRD-211ENST00000486161 5039 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 USP17L26-202ENST00000610514 1677 ntAPPRIS ALT2 TSL 5 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 USP17L20-202ENST00000613757 1677 ntAPPRIS ALT2 TSL 5 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 USP17L11-202ENST00000613973 1677 ntAPPRIS ALT2 TSL 5 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 USP17L17-202ENST00000614762 1677 ntAPPRIS ALT2 TSL 5 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 USP17L19-202ENST00000615989 1677 ntAPPRIS ALT2 TSL 5 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 USP17L13-202ENST00000616303 1677 ntAPPRIS ALT2 TSL 5 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 USP17L18-202ENST00000619296 1677 ntAPPRIS ALT2 TSL 5 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 USP17L25-202ENST00000621472 1677 ntAPPRIS ALT2 TSL 5 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 USP17L22-202ENST00000622009 1677 ntAPPRIS ALT2 TSL 5 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 USP17L24-202ENST00000622713 1677 ntAPPRIS ALT2 TSL 5 BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 HMGB1P5-201ENST00000255320 642 ntBASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 ODF1-201ENST00000285402 1013 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 BPIFA1-201ENST00000354297 1079 ntAPPRIS P2 TSL 1 (best) BASIC8.51□□□□□ -1.05
VPS9D1Q9Y2B5 RN7SKP239-201ENST00000364814 295 ntBASIC8.51□□□□□ -1.05
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms