Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC9.81□□□□□ -0.84
CUX1P39880 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
CUX1P39880 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC9.81□□□□□ -0.84
CUX1P39880 AC063977.5-201ENST00000601044 974 ntBASIC9.81□□□□□ -0.84
CUX1P39880 C14orf166-201ENST00000261700 7075 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
CUX1P39880 DSC3-202ENST00000434452 6978 ntTSL 5 BASIC9.81□□□□□ -0.84
CUX1P39880 PLEKHG4B-204ENST00000637938 12612 ntAPPRIS ALT2 TSL 5 BASIC9.8□□□□□ -0.84
CUX1P39880 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC9.8□□□□□ -0.84
CUX1P39880 HLF-210ENST00000575345 3589 ntTSL 2 BASIC9.8□□□□□ -0.84
CUX1P39880 CCDC93-201ENST00000319432 6896 ntAPPRIS ALT1 TSL 5 BASIC9.8□□□□□ -0.84
CUX1P39880 CCDC93-202ENST00000376300 6899 ntAPPRIS P2 TSL 1 (best) BASIC9.8□□□□□ -0.84
CUX1P39880 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
CUX1P39880 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
CUX1P39880 SPTAN1-222ENST00000630804 7812 ntTSL 5 BASIC9.8□□□□□ -0.84
CUX1P39880 CARF-202ENST00000402905 5938 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
CUX1P39880 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC9.8□□□□□ -0.84
CUX1P39880 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
CUX1P39880 CCNT1-201ENST00000261900 6973 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
CUX1P39880 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
CUX1P39880 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
CUX1P39880 AC005042.1-201ENST00000393397 800 ntBASIC9.8□□□□□ -0.84
CUX1P39880 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC9.8□□□□□ -0.84
CUX1P39880 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
CUX1P39880 RPL35AP28-201ENST00000459730 331 ntBASIC9.8□□□□□ -0.84
CUX1P39880 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC9.8□□□□□ -0.84
CUX1P39880 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC9.8□□□□□ -0.84
CUX1P39880 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC9.8□□□□□ -0.84
CUX1P39880 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC9.8□□□□□ -0.84
CUX1P39880 AC027334.1-201ENST00000603257 310 ntBASIC9.8□□□□□ -0.84
CUX1P39880 AL355974.3-201ENST00000617383 467 ntBASIC9.8□□□□□ -0.84
CUX1P39880 CHD8-201ENST00000399982 8229 ntAPPRIS ALT2 TSL 1 (best) BASIC9.8□□□□□ -0.84
CUX1P39880 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC9.8□□□□□ -0.84
CUX1P39880 Z99129.3-201ENST00000624363 6430 ntTSL 2 BASIC9.8□□□□□ -0.84
CUX1P39880 BRD7-202ENST00000394689 2145 ntAPPRIS ALT1 TSL 1 (best) BASIC9.8□□□□□ -0.84
CUX1P39880 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC9.8□□□□□ -0.84
CUX1P39880 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC9.79□□□□□ -0.84
CUX1P39880 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
CUX1P39880 LRBA-209ENST00000510413 10032 ntAPPRIS ALT2 TSL 1 (best) BASIC9.79□□□□□ -0.84
CUX1P39880 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC9.79□□□□□ -0.84
CUX1P39880 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC9.79□□□□□ -0.84
CUX1P39880 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC9.79□□□□□ -0.84
CUX1P39880 PSMD10P3-201ENST00000437000 448 ntBASIC9.79□□□□□ -0.84
CUX1P39880 RPL12P3-201ENST00000440080 396 ntBASIC9.79□□□□□ -0.84
CUX1P39880 H2AFZP6-201ENST00000444403 394 ntBASIC9.79□□□□□ -0.84
CUX1P39880 AURKAPS1-201ENST00000451805 1212 ntBASIC9.79□□□□□ -0.84
CUX1P39880 AL035090.1-201ENST00000454835 332 ntBASIC9.79□□□□□ -0.84
CUX1P39880 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC9.79□□□□□ -0.84
CUX1P39880 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC9.79□□□□□ -0.84
CUX1P39880 AC015720.2-201ENST00000567709 334 ntBASIC9.79□□□□□ -0.84
CUX1P39880 AC103810.5-201ENST00000581622 560 ntTSL 5 BASIC9.79□□□□□ -0.84
CUX1P39880 SETP3-201ENST00000581726 813 ntBASIC9.79□□□□□ -0.84
CUX1P39880 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC9.79□□□□□ -0.84
CUX1P39880 MAP4K4-221ENST00000634702 3800 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
CUX1P39880 MTIF2-201ENST00000263629 2528 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
CUX1P39880 LRRTM3-201ENST00000361320 4358 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
CUX1P39880 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC9.79□□□□□ -0.84
CUX1P39880 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC9.79□□□□□ -0.84
CUX1P39880 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
CUX1P39880 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC9.79□□□□□ -0.84
CUX1P39880 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC9.78□□□□□ -0.84
CUX1P39880 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
CUX1P39880 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
CUX1P39880 AC068189.1-201ENST00000501164 2632 ntTSL 2 BASIC9.78□□□□□ -0.84
CUX1P39880 ZNF407-202ENST00000309902 5595 ntTSL 2 BASIC9.78□□□□□ -0.84
CUX1P39880 GAPDHP24-201ENST00000328713 983 ntBASIC9.78□□□□□ -0.84
CUX1P39880 RNU1-106P-201ENST00000384382 164 ntBASIC9.78□□□□□ -0.84
CUX1P39880 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC9.78□□□□□ -0.84
CUX1P39880 MYL6P5-201ENST00000412707 459 ntBASIC9.78□□□□□ -0.84
CUX1P39880 RPL23AP27-201ENST00000415161 451 ntBASIC9.78□□□□□ -0.84
CUX1P39880 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC9.78□□□□□ -0.84
CUX1P39880 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
CUX1P39880 AC006335.2-201ENST00000437993 330 ntBASIC9.78□□□□□ -0.84
CUX1P39880 OR13K1P-201ENST00000444577 975 ntBASIC9.78□□□□□ -0.84
CUX1P39880 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
CUX1P39880 RN7SL30P-201ENST00000488416 306 ntBASIC9.78□□□□□ -0.84
CUX1P39880 RPEP1-201ENST00000504507 658 ntBASIC9.78□□□□□ -0.84
CUX1P39880 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC9.78□□□□□ -0.84
CUX1P39880 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC9.78□□□□□ -0.84
CUX1P39880 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC9.78□□□□□ -0.84
CUX1P39880 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC9.78□□□□□ -0.84
CUX1P39880 AC126177.5-201ENST00000549599 178 ntBASIC9.78□□□□□ -0.84
CUX1P39880 HMGN2P6-201ENST00000551091 273 ntBASIC9.78□□□□□ -0.84
CUX1P39880 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC9.78□□□□□ -0.84
CUX1P39880 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC9.78□□□□□ -0.84
CUX1P39880 OR52B5P-201ENST00000435337 951 ntBASIC9.77□□□□□ -0.84
CUX1P39880 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC9.77□□□□□ -0.84
CUX1P39880 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC9.77□□□□□ -0.84
CUX1P39880 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC9.77□□□□□ -0.84
CUX1P39880 AL118522.2-201ENST00000616045 615 ntBASIC9.77□□□□□ -0.84
CUX1P39880 OR52B5P-202ENST00000641118 1110 ntBASIC9.77□□□□□ -0.84
CUX1P39880 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC9.77□□□□□ -0.84
CUX1P39880 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
CUX1P39880 CLTC-210ENST00000579456 2301 ntTSL 5 BASIC9.77□□□□□ -0.85
CUX1P39880 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC9.77□□□□□ -0.85
CUX1P39880 MLLT3-203ENST00000380338 6772 ntAPPRIS P3 TSL 1 (best) BASIC9.77□□□□□ -0.85
CUX1P39880 NDUFA9-201ENST00000266544 8363 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
CUX1P39880 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC9.77□□□□□ -0.85
CUX1P39880 AL133243.4-201ENST00000623116 3109 ntBASIC9.77□□□□□ -0.85
CUX1P39880 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
CUX1P39880 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC9.77□□□□□ -0.85
Retrieved 100 of 98,524 protein–RNA pairs in 118.7 ms