Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PKHD1-201ENST00000340994 11589 ntAPPRIS ALT2 TSL 5 BASIC7.15□□□□□ -1.26
BRCA1P38398 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC7.15□□□□□ -1.26
BRCA1P38398 AL591848.4-201ENST00000567832 3472 ntBASIC7.15□□□□□ -1.26
BRCA1P38398 PARN-201ENST00000341484 2100 ntTSL 2 BASIC7.15□□□□□ -1.26
BRCA1P38398 IKZF3-203ENST00000346872 9667 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
BRCA1P38398 CACNB4-225ENST00000636442 4232 ntTSL 5 BASIC7.15□□□□□ -1.26
BRCA1P38398 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
BRCA1P38398 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC7.15□□□□□ -1.26
BRCA1P38398 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC7.15□□□□□ -1.26
BRCA1P38398 URB1-201ENST00000382751 10832 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
BRCA1P38398 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC7.15□□□□□ -1.26
BRCA1P38398 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC7.15□□□□□ -1.26
BRCA1P38398 OFD1P10Y-201ENST00000434110 1433 ntBASIC7.15□□□□□ -1.27
BRCA1P38398 ARMC8-210ENST00000469044 4790 ntAPPRIS P1 TSL 5 BASIC7.15□□□□□ -1.27
BRCA1P38398 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
BRCA1P38398 DRP2-202ENST00000395209 7277 ntAPPRIS P3 TSL 1 (best) BASIC7.15□□□□□ -1.27
BRCA1P38398 KIAA1217-204ENST00000376454 7381 ntAPPRIS P3 TSL 1 (best) BASIC7.15□□□□□ -1.27
BRCA1P38398 YIPF4-201ENST00000238831 11949 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
BRCA1P38398 RASGRP3-203ENST00000407811 4210 ntAPPRIS ALT1 TSL 1 (best) BASIC7.15□□□□□ -1.27
BRCA1P38398 ZNF716-201ENST00000420713 5197 ntAPPRIS P1 TSL 4 BASIC7.15□□□□□ -1.27
BRCA1P38398 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC7.15□□□□□ -1.27
BRCA1P38398 SENP8-201ENST00000340912 4281 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
BRCA1P38398 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC7.15□□□□□ -1.27
BRCA1P38398 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
BRCA1P38398 HIST1H3PS1-201ENST00000404612 417 ntBASIC7.15□□□□□ -1.27
BRCA1P38398 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC7.15□□□□□ -1.27
BRCA1P38398 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
BRCA1P38398 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC7.15□□□□□ -1.27
BRCA1P38398 OR51A1P-201ENST00000511110 946 ntBASIC7.15□□□□□ -1.27
BRCA1P38398 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC7.15□□□□□ -1.27
BRCA1P38398 OR4H6P-201ENST00000563771 921 ntBASIC7.15□□□□□ -1.27
BRCA1P38398 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC7.15□□□□□ -1.27
BRCA1P38398 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC7.15□□□□□ -1.27
BRCA1P38398 AC000068.2-201ENST00000608816 460 ntBASIC7.15□□□□□ -1.27
BRCA1P38398 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC7.15□□□□□ -1.27
BRCA1P38398 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
BRCA1P38398 B4GALT4-207ENST00000467604 5794 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
BRCA1P38398 USP6-201ENST00000250066 7976 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
BRCA1P38398 C1GALT1-201ENST00000223122 6078 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
BRCA1P38398 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
BRCA1P38398 OR1M1-202ENST00000641627 2535 ntAPPRIS P1 BASIC7.15□□□□□ -1.27
BRCA1P38398 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC7.15□□□□□ -1.27
BRCA1P38398 ADTRP-203ENST00000414691 2058 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
BRCA1P38398 SYNPO2-202ENST00000429713 9920 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
BRCA1P38398 RIPOR2-208ENST00000613507 5539 ntAPPRIS P4 TSL 5 BASIC7.14□□□□□ -1.27
BRCA1P38398 AC087477.2-202ENST00000558499 4856 ntTSL 4 BASIC7.14□□□□□ -1.27
BRCA1P38398 TMEM269-204ENST00000637012 3354 ntAPPRIS ALT2 TSL 5 BASIC7.14□□□□□ -1.27
BRCA1P38398 BORCS7-ASMT-201ENST00000299353 2670 ntAPPRIS P1 TSL 5 BASIC7.14□□□□□ -1.27
BRCA1P38398 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
BRCA1P38398 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
BRCA1P38398 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC7.14□□□□□ -1.27
BRCA1P38398 MYCBP2-201ENST00000357337 14736 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
BRCA1P38398 UTY-210ENST00000538878 6574 ntAPPRIS ALT2 TSL 1 (best) BASIC7.14□□□□□ -1.27
BRCA1P38398 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
BRCA1P38398 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC7.14□□□□□ -1.27
BRCA1P38398 SLC7A2-202ENST00000398090 7557 ntAPPRIS P3 TSL 1 (best) BASIC7.14□□□□□ -1.27
BRCA1P38398 MIR133B-201ENST00000362210 119 ntBASIC7.14□□□□□ -1.27
BRCA1P38398 AL645733.1-201ENST00000402250 217 ntBASIC7.14□□□□□ -1.27
BRCA1P38398 RPL7L1P9-201ENST00000431298 745 ntBASIC7.14□□□□□ -1.27
BRCA1P38398 AC091390.1-201ENST00000433904 331 ntBASIC7.14□□□□□ -1.27
BRCA1P38398 DAP3-209ENST00000465375 729 ntTSL 2 BASIC7.14□□□□□ -1.27
BRCA1P38398 RPL7P6-201ENST00000480903 738 ntBASIC7.14□□□□□ -1.27
BRCA1P38398 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC7.14□□□□□ -1.27
BRCA1P38398 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC7.14□□□□□ -1.27
BRCA1P38398 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC7.14□□□□□ -1.27
BRCA1P38398 RNU4ATAC-201ENST00000580972 127 ntBASIC7.14□□□□□ -1.27
BRCA1P38398 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC7.14□□□□□ -1.27
BRCA1P38398 MIR8089-201ENST00000620165 82 ntBASIC7.14□□□□□ -1.27
BRCA1P38398 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC7.14□□□□□ -1.27
BRCA1P38398 CRYBG3-201ENST00000389622 10729 ntAPPRIS P1 TSL 5 BASIC7.14□□□□□ -1.27
BRCA1P38398 PRND-201ENST00000305817 3980 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
BRCA1P38398 EEF1A1P30-201ENST00000429708 1315 ntBASIC7.14□□□□□ -1.27
BRCA1P38398 NEK1-208ENST00000512193 4430 ntAPPRIS ALT2 TSL 1 (best) BASIC7.14□□□□□ -1.27
BRCA1P38398 NFAT5-201ENST00000349945 13362 ntAPPRIS ALT1 TSL 1 (best) BASIC7.14□□□□□ -1.27
BRCA1P38398 DOCK8-205ENST00000453981 7237 ntTSL 5 BASIC7.14□□□□□ -1.27
BRCA1P38398 ANKRD31-201ENST00000274361 6036 ntAPPRIS P2 TSL 5 BASIC7.14□□□□□ -1.27
BRCA1P38398 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
BRCA1P38398 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC7.14□□□□□ -1.27
BRCA1P38398 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
BRCA1P38398 TSC1-208ENST00000545250 8310 ntTSL 5 BASIC7.13□□□□□ -1.27
BRCA1P38398 LINC02532-208ENST00000602621 2232 ntTSL 2 BASIC7.13□□□□□ -1.27
BRCA1P38398 MID1-203ENST00000380780 6195 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
BRCA1P38398 NBPF26-204ENST00000615145 2656 ntTSL 5 BASIC7.13□□□□□ -1.27
BRCA1P38398 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC7.13□□□□□ -1.27
BRCA1P38398 ZNF658B-201ENST00000602828 3408 ntBASIC7.13□□□□□ -1.27
BRCA1P38398 TRPM3-204ENST00000360823 5966 ntAPPRIS ALT2 TSL 5 BASIC7.13□□□□□ -1.27
BRCA1P38398 RN7SKP28-201ENST00000364770 305 ntBASIC7.13□□□□□ -1.27
BRCA1P38398 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
BRCA1P38398 PTCD2P2-201ENST00000415579 1095 ntBASIC7.13□□□□□ -1.27
BRCA1P38398 PGM5-AS1-202ENST00000420855 572 ntTSL 3 BASIC7.13□□□□□ -1.27
BRCA1P38398 AL139415.1-201ENST00000424862 352 ntBASIC7.13□□□□□ -1.27
BRCA1P38398 AC079841.1-201ENST00000481228 950 ntBASIC7.13□□□□□ -1.27
BRCA1P38398 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
BRCA1P38398 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC7.13□□□□□ -1.27
BRCA1P38398 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC7.13□□□□□ -1.27
BRCA1P38398 IGHV1-14-201ENST00000523391 241 ntBASIC7.13□□□□□ -1.27
BRCA1P38398 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC7.13□□□□□ -1.27
BRCA1P38398 AL049779.2-201ENST00000553847 315 ntBASIC7.13□□□□□ -1.27
BRCA1P38398 RPL10P14-201ENST00000565265 298 ntBASIC7.13□□□□□ -1.27
BRCA1P38398 GARSP1-201ENST00000570895 719 ntBASIC7.13□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 148.4 ms