Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC5.92□□□□□ -1.46
COL6A3P12111 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC5.92□□□□□ -1.46
COL6A3P12111 AC092647.2-201ENST00000452998 253 ntBASIC5.92□□□□□ -1.46
COL6A3P12111 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC5.92□□□□□ -1.46
COL6A3P12111 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC5.92□□□□□ -1.46
COL6A3P12111 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.92□□□□□ -1.46
COL6A3P12111 AC068724.2-201ENST00000565685 532 ntTSL 4 BASIC5.92□□□□□ -1.46
COL6A3P12111 GARSP1-201ENST00000570895 719 ntBASIC5.92□□□□□ -1.46
COL6A3P12111 GC-201ENST00000273951 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL6A3P12111 FNDC3A-204ENST00000492622 6286 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL6A3P12111 LYRM4-201ENST00000330636 7312 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL6A3P12111 ACOT13-203ENST00000537591 4391 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL6A3P12111 FMN1-211ENST00000561249 4251 ntAPPRIS ALT2 TSL 5 BASIC5.92□□□□□ -1.46
COL6A3P12111 PKD1-201ENST00000262304 14138 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL6A3P12111 PKD1-203ENST00000423118 14135 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL6A3P12111 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
COL6A3P12111 CABIN1-214ENST00000617531 7072 ntAPPRIS ALT2 TSL 5 BASIC5.92□□□□□ -1.46
COL6A3P12111 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL6A3P12111 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
COL6A3P12111 AC119751.6-201ENST00000416712 186 ntBASIC5.92□□□□□ -1.46
COL6A3P12111 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC5.92□□□□□ -1.46
COL6A3P12111 PPIAP21-201ENST00000464473 501 ntBASIC5.92□□□□□ -1.46
COL6A3P12111 NIP7P2-201ENST00000485801 544 ntBASIC5.92□□□□□ -1.46
COL6A3P12111 AC020593.1-201ENST00000507399 299 ntBASIC5.92□□□□□ -1.46
COL6A3P12111 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC5.92□□□□□ -1.46
COL6A3P12111 AC090458.1-203ENST00000527757 546 ntTSL 3 BASIC5.92□□□□□ -1.46
COL6A3P12111 LINC00871-204ENST00000556886 866 ntTSL 3 BASIC5.92□□□□□ -1.46
COL6A3P12111 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC5.92□□□□□ -1.46
COL6A3P12111 MIR6716-201ENST00000613413 80 ntBASIC5.92□□□□□ -1.46
COL6A3P12111 AC005858.4-201ENST00000623191 700 ntBASIC5.92□□□□□ -1.46
COL6A3P12111 ADTRP-203ENST00000414691 2058 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL6A3P12111 POGK-202ENST00000367876 5754 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL6A3P12111 ZNF611-204ENST00000543227 4517 ntAPPRIS P1 TSL 4 BASIC5.91□□□□□ -1.46
COL6A3P12111 ABCC5-205ENST00000427120 4697 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
COL6A3P12111 CASC19-260ENST00000641828 2001 ntBASIC5.91□□□□□ -1.46
COL6A3P12111 E2F8-201ENST00000250024 3240 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL6A3P12111 LMO3-208ENST00000441439 3515 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL6A3P12111 ARHGEF9-228ENST00000636926 5436 ntTSL 5 BASIC5.91□□□□□ -1.46
COL6A3P12111 COL11A1-202ENST00000358392 7327 ntAPPRIS ALT1 TSL 5 BASIC5.91□□□□□ -1.46
COL6A3P12111 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL6A3P12111 DHX8-201ENST00000262415 5558 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL6A3P12111 GPR107-201ENST00000347136 7209 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL6A3P12111 RNA5SP335-201ENST00000363817 110 ntBASIC5.91□□□□□ -1.46
COL6A3P12111 CYCSP10-201ENST00000417973 294 ntBASIC5.91□□□□□ -1.46
COL6A3P12111 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC5.91□□□□□ -1.46
COL6A3P12111 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC5.91□□□□□ -1.46
COL6A3P12111 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC5.91□□□□□ -1.46
COL6A3P12111 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC5.91□□□□□ -1.46
COL6A3P12111 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC5.91□□□□□ -1.46
COL6A3P12111 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
COL6A3P12111 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC5.91□□□□□ -1.46
COL6A3P12111 FBXO43-201ENST00000428847 2886 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL6A3P12111 RYR2-202ENST00000366574 16562 ntAPPRIS P2 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL6A3P12111 GRB10-207ENST00000402578 4760 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
COL6A3P12111 HTR1D-201ENST00000374619 2835 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
COL6A3P12111 PDE11A-201ENST00000286063 9275 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL6A3P12111 ACAN-201ENST00000352105 7526 ntTSL 5 BASIC5.91□□□□□ -1.46
COL6A3P12111 LPIN1-207ENST00000425416 5582 ntTSL 2 BASIC5.91□□□□□ -1.46
COL6A3P12111 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC5.91□□□□□ -1.46
COL6A3P12111 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
COL6A3P12111 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
COL6A3P12111 TNC-203ENST00000423613 6281 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
COL6A3P12111 WDPCP-204ENST00000409199 2466 ntTSL 2 BASIC5.91□□□□□ -1.46
COL6A3P12111 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL6A3P12111 OR55B1P-203ENST00000641518 2602 ntBASIC5.91□□□□□ -1.46
COL6A3P12111 OPALIN-203ENST00000393871 3545 ntTSL 2 BASIC5.91□□□□□ -1.46
COL6A3P12111 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.91□□□□□ -1.46
COL6A3P12111 RPS6P23-201ENST00000413224 722 ntBASIC5.91□□□□□ -1.46
COL6A3P12111 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC5.91□□□□□ -1.46
COL6A3P12111 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC5.91□□□□□ -1.46
COL6A3P12111 AL358232.1-201ENST00000448030 501 ntBASIC5.91□□□□□ -1.46
COL6A3P12111 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL6A3P12111 AL035690.1-201ENST00000490892 383 ntBASIC5.91□□□□□ -1.46
COL6A3P12111 AC139365.2-201ENST00000517972 253 ntBASIC5.91□□□□□ -1.46
COL6A3P12111 AC021006.3-201ENST00000530771 192 ntBASIC5.91□□□□□ -1.46
COL6A3P12111 AC134349.2-201ENST00000535136 910 ntBASIC5.91□□□□□ -1.46
COL6A3P12111 PCNT-201ENST00000359568 10560 ntAPPRIS P2 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL6A3P12111 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
COL6A3P12111 BICC1-202ENST00000373886 5475 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL6A3P12111 CNTNAP2-201ENST00000361727 9896 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL6A3P12111 ZMYM3-201ENST00000314425 5536 ntAPPRIS P2 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL6A3P12111 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC5.91□□□□□ -1.46
COL6A3P12111 AL359922.2-201ENST00000581788 3017 ntBASIC5.91□□□□□ -1.46
COL6A3P12111 LINC01087-201ENST00000431979 3516 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
COL6A3P12111 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.46
COL6A3P12111 UVSSA-202ENST00000389851 12605 ntAPPRIS P2 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL6A3P12111 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC5.9□□□□□ -1.46
COL6A3P12111 AC004980.4-201ENST00000513375 203 ntBASIC5.9□□□□□ -1.46
COL6A3P12111 CORIN-211ENST00000610355 4696 ntTSL 5 BASIC5.9□□□□□ -1.46
COL6A3P12111 AL139099.4-201ENST00000614802 114 ntBASIC5.9□□□□□ -1.46
COL6A3P12111 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC5.9□□□□□ -1.46
COL6A3P12111 ZNF268-201ENST00000228289 3543 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL6A3P12111 NUDCD1-201ENST00000239690 4217 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL6A3P12111 HMGB4-204ENST00000522796 2505 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.46
COL6A3P12111 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC5.9□□□□□ -1.46
COL6A3P12111 AC011455.2-201ENST00000599320 3336 ntBASIC5.9□□□□□ -1.46
COL6A3P12111 SYTL4-203ENST00000372981 4847 ntTSL 2 BASIC5.9□□□□□ -1.46
COL6A3P12111 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
COL6A3P12111 IL1B-201ENST00000263341 1631 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL6A3P12111 FBXL17-203ENST00000496714 3773 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms