Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 PLEKHA5-213ENST00000538714 6487 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
USH2AO75445 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC2.54□□□□□ -2
USH2AO75445 CYP1D1P-201ENST00000416662 1433 ntBASIC2.54□□□□□ -2
USH2AO75445 NBPF26-204ENST00000615145 2656 ntTSL 5 BASIC2.54□□□□□ -2
USH2AO75445 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC2.54□□□□□ -2
USH2AO75445 AC005332.9-201ENST00000620266 2921 ntBASIC2.54□□□□□ -2
USH2AO75445 ZNF561-204ENST00000424629 4419 ntTSL 2 BASIC2.54□□□□□ -2
USH2AO75445 NCOA1-204ENST00000405141 7405 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
USH2AO75445 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC2.54□□□□□ -2
USH2AO75445 CASC19-221ENST00000641309 1382 ntBASIC2.54□□□□□ -2
USH2AO75445 ZNF740-201ENST00000416904 8578 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
USH2AO75445 ZNF471-201ENST00000308031 6287 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
USH2AO75445 ATP8A1-202ENST00000381668 8270 ntTSL 1 (best) BASIC2.54□□□□□ -2
USH2AO75445 CAV1-204ENST00000393470 598 ntTSL 4 BASIC2.54□□□□□ -2
USH2AO75445 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC2.54□□□□□ -2
USH2AO75445 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC2.54□□□□□ -2
USH2AO75445 NPM1P33-201ENST00000438918 872 ntBASIC2.54□□□□□ -2
USH2AO75445 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC2.54□□□□□ -2
USH2AO75445 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC2.54□□□□□ -2
USH2AO75445 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC2.54□□□□□ -2
USH2AO75445 AC003992.1-201ENST00000635364 557 ntBASIC2.54□□□□□ -2
USH2AO75445 NLGN4X-201ENST00000275857 5454 ntAPPRIS P2 TSL 1 (best) BASIC2.54□□□□□ -2
USH2AO75445 YIPF4-201ENST00000238831 11949 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
USH2AO75445 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
USH2AO75445 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC2.54□□□□□ -2
USH2AO75445 JPX-212ENST00000639185 9658 ntTSL 5 BASIC2.54□□□□□ -2
USH2AO75445 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC2.54□□□□□ -2
USH2AO75445 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC2.54□□□□□ -2
USH2AO75445 LIMCH1-203ENST00000396595 5740 ntTSL 1 (best) BASIC2.54□□□□□ -2
USH2AO75445 PTPRG-AS1-204ENST00000474795 2661 ntTSL 1 (best) BASIC2.54□□□□□ -2
USH2AO75445 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
USH2AO75445 SNORA16A-201ENST00000384342 137 ntBASIC2.54□□□□□ -2
USH2AO75445 DSTNP5-201ENST00000427921 523 ntBASIC2.54□□□□□ -2
USH2AO75445 AC013399.1-201ENST00000450311 418 ntBASIC2.54□□□□□ -2
USH2AO75445 AC016027.4-201ENST00000450866 277 ntBASIC2.54□□□□□ -2
USH2AO75445 AC117395.1-201ENST00000487390 403 ntBASIC2.54□□□□□ -2
USH2AO75445 AC090638.1-201ENST00000498296 909 ntBASIC2.54□□□□□ -2
USH2AO75445 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC2.54□□□□□ -2
USH2AO75445 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC2.54□□□□□ -2
USH2AO75445 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC2.54□□□□□ -2
USH2AO75445 AC091042.1-201ENST00000579213 173 ntBASIC2.54□□□□□ -2
USH2AO75445 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC2.54□□□□□ -2
USH2AO75445 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC2.54□□□□□ -2
USH2AO75445 ZNF268-213ENST00000542986 3773 ntTSL 5 BASIC2.54□□□□□ -2
USH2AO75445 SCN5A-208ENST00000450102 6284 ntTSL 1 (best) BASIC2.54□□□□□ -2
USH2AO75445 ZC3H10-201ENST00000257940 7228 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
USH2AO75445 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
USH2AO75445 PIGN-230ENST00000638977 4601 ntTSL 5 BASIC2.53□□□□□ -2
USH2AO75445 PRRC1-204ENST00000512635 2726 ntTSL 1 (best) BASIC2.53□□□□□ -2
USH2AO75445 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC2.53□□□□□ -2
USH2AO75445 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC2.53□□□□□ -2
USH2AO75445 KIDINS220-201ENST00000256707 7361 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
USH2AO75445 BAHCC1-201ENST00000307745 10342 ntAPPRIS ALT2 TSL 5 BASIC2.53□□□□□ -2
USH2AO75445 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC2.53□□□□□ -2
USH2AO75445 TET3-202ENST00000409262 11388 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
USH2AO75445 RBM43-201ENST00000331426 4192 ntAPPRIS P2 TSL 1 (best) BASIC2.53□□□□□ -2
USH2AO75445 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC2.53□□□□□ -2
USH2AO75445 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC2.53□□□□□ -2
USH2AO75445 AFF2-202ENST00000342251 7313 ntTSL 1 (best) BASIC2.53□□□□□ -2
USH2AO75445 AL162456.1-201ENST00000634535 2006 ntBASIC2.53□□□□□ -2
USH2AO75445 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC2.53□□□□□ -2
USH2AO75445 MLIP-201ENST00000274897 1815 ntAPPRIS P3 TSL 2 BASIC2.53□□□□□ -2
USH2AO75445 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC2.53□□□□□ -2
USH2AO75445 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC2.53□□□□□ -2
USH2AO75445 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC2.53□□□□□ -2
USH2AO75445 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC2.53□□□□□ -2
USH2AO75445 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC2.53□□□□□ -2
USH2AO75445 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC2.53□□□□□ -2
USH2AO75445 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC2.53□□□□□ -2
USH2AO75445 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
USH2AO75445 ZNF407-202ENST00000309902 5595 ntTSL 2 BASIC2.53□□□□□ -2
USH2AO75445 HDAC2-AS2-208ENST00000519104 2016 ntTSL 1 (best) BASIC2.53□□□□□ -2
USH2AO75445 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2
USH2AO75445 LTBP1-202ENST00000404525 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2
USH2AO75445 SASH1-204ENST00000622663 5075 ntTSL 1 (best) BASIC2.53□□□□□ -2
USH2AO75445 PPP1R3B-201ENST00000310455 5548 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
USH2AO75445 MFSD8-239ENST00000641590 2479 ntBASIC2.53□□□□□ -2
USH2AO75445 SAR1A-205ENST00000373242 5981 ntAPPRIS P1 TSL 2 BASIC2.53□□□□□ -2
USH2AO75445 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC2.53□□□□□ -2
USH2AO75445 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
USH2AO75445 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC2.53□□□□□ -2
USH2AO75445 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC2.53□□□□□ -2
USH2AO75445 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC2.53□□□□□ -2
USH2AO75445 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC2.53□□□□□ -2
USH2AO75445 EPS8-213ENST00000543612 2965 ntAPPRIS P1 TSL 2 BASIC2.53□□□□□ -2
USH2AO75445 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC2.53□□□□□ -2
USH2AO75445 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC2.53□□□□□ -2
USH2AO75445 OR9G4-201ENST00000302957 984 ntBASIC2.53□□□□□ -2
USH2AO75445 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC2.53□□□□□ -2
USH2AO75445 NRIR-201ENST00000366140 799 ntTSL 3 BASIC2.53□□□□□ -2
USH2AO75445 NUDT19P3-201ENST00000404698 555 ntBASIC2.53□□□□□ -2
USH2AO75445 NPM1P40-201ENST00000412758 733 ntBASIC2.53□□□□□ -2
USH2AO75445 PTCD2P2-201ENST00000415579 1095 ntBASIC2.53□□□□□ -2
USH2AO75445 AL133482.1-201ENST00000415988 498 ntBASIC2.53□□□□□ -2
USH2AO75445 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC2.53□□□□□ -2
USH2AO75445 GAS5-208ENST00000425771 242 ntTSL 3 BASIC2.53□□□□□ -2
USH2AO75445 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC2.53□□□□□ -2
USH2AO75445 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC2.53□□□□□ -2
USH2AO75445 AL359644.1-204ENST00000440807 440 ntTSL 3 BASIC2.53□□□□□ -2
USH2AO75445 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 125.9 ms