Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 PABPC3-201ENST00000281589 3387 ntAPPRIS P1 BASIC8.33□□□□□ -1.08
HLA-CQ95604 FHAD1-206ENST00000375998 4355 ntAPPRIS P1 TSL 5 BASIC8.33□□□□□ -1.08
HLA-CQ95604 OR56B1-201ENST00000317121 2075 ntAPPRIS P1 BASIC8.33□□□□□ -1.08
HLA-CQ95604 MAP3K19-202ENST00000375844 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC8.32□□□□□ -1.08
HLA-CQ95604 AC022784.6-204ENST00000520390 3442 ntTSL 2 BASIC8.32□□□□□ -1.08
HLA-CQ95604 AL512353.3-201ENST00000417517 1326 ntBASIC8.32□□□□□ -1.08
HLA-CQ95604 LRTOMT-203ENST00000324866 2402 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
HLA-CQ95604 ERCC5-202ENST00000375954 2986 ntTSL 5 BASIC8.32□□□□□ -1.08
HLA-CQ95604 AC125232.1-201ENST00000452554 1408 ntBASIC8.32□□□□□ -1.08
HLA-CQ95604 CORIN-207ENST00000505909 3018 ntTSL 5 BASIC8.32□□□□□ -1.08
HLA-CQ95604 FRG1BP-201ENST00000278882 761 ntBASIC8.32□□□□□ -1.08
HLA-CQ95604 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
HLA-CQ95604 SYF2-202ENST00000354361 926 ntTSL 2 BASIC8.32□□□□□ -1.08
HLA-CQ95604 FRG1CP-201ENST00000358464 769 ntBASIC8.32□□□□□ -1.08
HLA-CQ95604 RNA5SP79-201ENST00000365193 109 ntBASIC8.32□□□□□ -1.08
HLA-CQ95604 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC8.32□□□□□ -1.08
HLA-CQ95604 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC8.32□□□□□ -1.08
HLA-CQ95604 MTCYBP36-201ENST00000404146 440 ntBASIC8.32□□□□□ -1.08
HLA-CQ95604 RPA2P2-201ENST00000419698 796 ntBASIC8.32□□□□□ -1.08
HLA-CQ95604 FAM183DP-201ENST00000421987 399 ntBASIC8.32□□□□□ -1.08
HLA-CQ95604 ZNF880-203ENST00000424032 558 ntTSL 4 BASIC8.32□□□□□ -1.08
HLA-CQ95604 AC099344.1-201ENST00000433548 492 ntBASIC8.32□□□□□ -1.08
HLA-CQ95604 AC092167.1-201ENST00000435466 495 ntTSL 4 BASIC8.32□□□□□ -1.08
HLA-CQ95604 LDHAP2-201ENST00000437325 985 ntBASIC8.32□□□□□ -1.08
HLA-CQ95604 NQO1-204ENST00000439109 924 ntTSL 2 BASIC8.32□□□□□ -1.08
HLA-CQ95604 AL445623.1-201ENST00000440888 237 ntTSL 3 BASIC8.32□□□□□ -1.08
HLA-CQ95604 ARPC3P2-201ENST00000457786 533 ntBASIC8.32□□□□□ -1.08
HLA-CQ95604 SNORA35.1-201ENST00000458908 128 ntBASIC8.32□□□□□ -1.08
HLA-CQ95604 TFP1-201ENST00000460564 572 ntTSL 4 BASIC8.32□□□□□ -1.08
HLA-CQ95604 AC100843.1-201ENST00000475372 550 ntBASIC8.32□□□□□ -1.08
HLA-CQ95604 RN7SL267P-201ENST00000485107 261 ntBASIC8.32□□□□□ -1.08
HLA-CQ95604 TFP1-203ENST00000490470 561 ntTSL 4 BASIC8.32□□□□□ -1.08
HLA-CQ95604 ZNF525-204ENST00000491101 569 ntTSL 4 BASIC8.32□□□□□ -1.08
HLA-CQ95604 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC8.32□□□□□ -1.08
HLA-CQ95604 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
HLA-CQ95604 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC8.32□□□□□ -1.08
HLA-CQ95604 AC112225.1-201ENST00000508230 297 ntBASIC8.32□□□□□ -1.08
HLA-CQ95604 GUSBP3-201ENST00000509348 423 ntBASIC8.32□□□□□ -1.08
HLA-CQ95604 DKK2-202ENST00000510463 908 ntTSL 3 BASIC8.32□□□□□ -1.08
HLA-CQ95604 AC239860.2-201ENST00000525886 270 ntBASIC8.32□□□□□ -1.08
HLA-CQ95604 AP002748.2-201ENST00000528671 348 ntBASIC8.32□□□□□ -1.08
HLA-CQ95604 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC8.32□□□□□ -1.08
HLA-CQ95604 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC8.32□□□□□ -1.08
HLA-CQ95604 AL359212.1-201ENST00000556608 614 ntBASIC8.32□□□□□ -1.08
HLA-CQ95604 AC044860.3-201ENST00000559957 368 ntBASIC8.32□□□□□ -1.08
HLA-CQ95604 AC020687.1-201ENST00000560439 448 ntTSL 3 BASIC8.32□□□□□ -1.08
HLA-CQ95604 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC8.32□□□□□ -1.08
HLA-CQ95604 LINC02028-206ENST00000593326 810 ntTSL 5 BASIC8.32□□□□□ -1.08
HLA-CQ95604 AL133351.5-201ENST00000612789 106 ntBASIC8.32□□□□□ -1.08
HLA-CQ95604 AC079228.1-201ENST00000624774 1049 ntBASIC8.32□□□□□ -1.08
HLA-CQ95604 CRYM-AS1-204ENST00000637983 556 ntBASIC8.32□□□□□ -1.08
HLA-CQ95604 BBS4-201ENST00000268057 2490 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
HLA-CQ95604 PPP4R1L-202ENST00000334187 2746 ntBASIC8.32□□□□□ -1.08
HLA-CQ95604 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC8.32□□□□□ -1.08
HLA-CQ95604 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
HLA-CQ95604 IQCH-AS1-203ENST00000559298 5753 ntTSL 5 BASIC8.32□□□□□ -1.08
HLA-CQ95604 KAT14-202ENST00000435364 3618 ntAPPRIS P2 TSL 1 (best) BASIC8.32□□□□□ -1.08
HLA-CQ95604 SPIN4-201ENST00000374884 4117 ntAPPRIS P1 BASIC8.32□□□□□ -1.08
HLA-CQ95604 CLUHP3-206ENST00000562354 4117 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
HLA-CQ95604 HHLA2-201ENST00000357759 2666 ntAPPRIS P3 TSL 1 (best) BASIC8.32□□□□□ -1.08
HLA-CQ95604 GLDCP1-201ENST00000510885 2678 ntBASIC8.32□□□□□ -1.08
HLA-CQ95604 AP4S1-204ENST00000542754 4243 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
HLA-CQ95604 HERC2P5-201ENST00000562687 3825 ntBASIC8.32□□□□□ -1.08
HLA-CQ95604 TRPC3-201ENST00000264811 3675 ntAPPRIS P3 TSL 1 (best) BASIC8.32□□□□□ -1.08
HLA-CQ95604 LINC02072-201ENST00000441895 2645 ntTSL 2 BASIC8.32□□□□□ -1.08
HLA-CQ95604 ACTR6-209ENST00000551617 1715 ntTSL 5 BASIC8.32□□□□□ -1.08
HLA-CQ95604 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
HLA-CQ95604 PIWIL2-205ENST00000611073 2864 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
HLA-CQ95604 CTNND1-201ENST00000358694 6135 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
HLA-CQ95604 AL136298.2-201ENST00000556497 1570 ntBASIC8.31□□□□□ -1.08
HLA-CQ95604 SMARCA1-202ENST00000371122 4099 ntAPPRIS P3 TSL 1 (best) BASIC8.31□□□□□ -1.08
HLA-CQ95604 HERC2P3-206ENST00000429257 4088 ntBASIC8.31□□□□□ -1.08
HLA-CQ95604 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC8.31□□□□□ -1.08
HLA-CQ95604 PIK3R1-202ENST00000336483 2439 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
HLA-CQ95604 ARHGEF3-214ENST00000497267 2197 ntTSL 2 BASIC8.31□□□□□ -1.08
HLA-CQ95604 SUB1-201ENST00000265073 3507 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
HLA-CQ95604 A1CF-201ENST00000282641 9350 ntAPPRIS ALT1 TSL 2 BASIC8.31□□□□□ -1.08
HLA-CQ95604 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC8.31□□□□□ -1.08
HLA-CQ95604 UBLCP1-201ENST00000296786 2392 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
HLA-CQ95604 TDP1-202ENST00000393452 2370 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
HLA-CQ95604 Y_RNA.72-201ENST00000362894 103 ntBASIC8.31□□□□□ -1.08
HLA-CQ95604 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
HLA-CQ95604 ERMN-204ENST00000409925 556 ntTSL 4 BASIC8.31□□□□□ -1.08
HLA-CQ95604 RNU4-55P-201ENST00000410731 137 ntBASIC8.31□□□□□ -1.08
HLA-CQ95604 MTND3P17-201ENST00000416968 344 ntBASIC8.31□□□□□ -1.08
HLA-CQ95604 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC8.31□□□□□ -1.08
HLA-CQ95604 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC8.31□□□□□ -1.08
HLA-CQ95604 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC8.31□□□□□ -1.08
HLA-CQ95604 RABEPKP1-201ENST00000440529 1026 ntBASIC8.31□□□□□ -1.08
HLA-CQ95604 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC8.31□□□□□ -1.08
HLA-CQ95604 USP9YP15-201ENST00000442391 422 ntBASIC8.31□□□□□ -1.08
HLA-CQ95604 CRYZL1-217ENST00000445393 824 ntTSL 5 BASIC8.31□□□□□ -1.08
HLA-CQ95604 SNRPGP6-201ENST00000451124 220 ntBASIC8.31□□□□□ -1.08
HLA-CQ95604 AL513533.1-201ENST00000453728 415 ntBASIC8.31□□□□□ -1.08
HLA-CQ95604 RPE-216ENST00000454822 2130 ntTSL 2 BASIC8.31□□□□□ -1.08
HLA-CQ95604 YAP1P2-201ENST00000455104 610 ntBASIC8.31□□□□□ -1.08
HLA-CQ95604 RBMY2EP-202ENST00000456360 940 ntBASIC8.31□□□□□ -1.08
HLA-CQ95604 AC013429.1-201ENST00000456604 422 ntBASIC8.31□□□□□ -1.08
HLA-CQ95604 SULT1D1P-201ENST00000458020 882 ntBASIC8.31□□□□□ -1.08
HLA-CQ95604 RN7SL19P-201ENST00000462522 306 ntBASIC8.31□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 91.5 ms