Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SKA3Q8IX90 METTL5-202ENST00000308099 629 ntTSL 3 BASIC5.49□□□□□ -1.53
SKA3Q8IX90 RN7SKP250-201ENST00000363924 321 ntBASIC5.49□□□□□ -1.53
SKA3Q8IX90 TINAG-203ENST00000370869 782 ntTSL 3 BASIC5.49□□□□□ -1.53
SKA3Q8IX90 RNU11-6P-201ENST00000391127 133 ntBASIC5.49□□□□□ -1.53
SKA3Q8IX90 CAV1-204ENST00000393470 598 ntTSL 4 BASIC5.49□□□□□ -1.53
SKA3Q8IX90 SULT1C2-204ENST00000409880 1206 ntTSL 3 BASIC5.49□□□□□ -1.53
SKA3Q8IX90 THEM7P-201ENST00000419556 672 ntBASIC5.49□□□□□ -1.53
SKA3Q8IX90 AC005008.2-201ENST00000431501 715 ntTSL 3 BASIC5.49□□□□□ -1.53
SKA3Q8IX90 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC5.49□□□□□ -1.53
SKA3Q8IX90 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
SKA3Q8IX90 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
SKA3Q8IX90 AL022237.1-201ENST00000446663 358 ntBASIC5.49□□□□□ -1.53
SKA3Q8IX90 AL133351.3-201ENST00000454998 193 ntBASIC5.49□□□□□ -1.53
SKA3Q8IX90 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC5.49□□□□□ -1.53
SKA3Q8IX90 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SKA3Q8IX90 RPS27P20-201ENST00000492051 246 ntBASIC5.49□□□□□ -1.53
SKA3Q8IX90 RN7SL104P-201ENST00000498686 293 ntBASIC5.49□□□□□ -1.53
SKA3Q8IX90 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC5.49□□□□□ -1.53
SKA3Q8IX90 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC5.49□□□□□ -1.53
SKA3Q8IX90 AC096576.2-201ENST00000511835 948 ntTSL 3 BASIC5.49□□□□□ -1.53
SKA3Q8IX90 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC5.49□□□□□ -1.53
SKA3Q8IX90 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC5.49□□□□□ -1.53
SKA3Q8IX90 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC5.49□□□□□ -1.53
SKA3Q8IX90 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC5.49□□□□□ -1.53
SKA3Q8IX90 MIR3189-201ENST00000578735 73 ntBASIC5.49□□□□□ -1.53
SKA3Q8IX90 TTC39C-AS1-201ENST00000579713 817 ntTSL 5 BASIC5.49□□□□□ -1.53
SKA3Q8IX90 LINC01841-201ENST00000586698 573 ntTSL 4 BASIC5.49□□□□□ -1.53
SKA3Q8IX90 OSTC-205ENST00000613215 876 ntTSL 2 BASIC5.49□□□□□ -1.53
SKA3Q8IX90 AC010998.3-201ENST00000613871 631 ntBASIC5.49□□□□□ -1.53
SKA3Q8IX90 AC244100.4-201ENST00000617747 388 ntBASIC5.49□□□□□ -1.53
SKA3Q8IX90 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
SKA3Q8IX90 SCAMP1-206ENST00000618166 1358 ntTSL 2 BASIC5.49□□□□□ -1.53
SKA3Q8IX90 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
SKA3Q8IX90 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SKA3Q8IX90 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.49□□□□□ -1.53
SKA3Q8IX90 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
SKA3Q8IX90 AC125336.1-201ENST00000508893 2827 ntBASIC5.49□□□□□ -1.53
SKA3Q8IX90 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
SKA3Q8IX90 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC5.49□□□□□ -1.53
SKA3Q8IX90 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SKA3Q8IX90 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SKA3Q8IX90 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SKA3Q8IX90 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC5.48□□□□□ -1.53
SKA3Q8IX90 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SKA3Q8IX90 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC5.48□□□□□ -1.53
SKA3Q8IX90 AL133243.2-201ENST00000610331 1621 ntBASIC5.48□□□□□ -1.53
SKA3Q8IX90 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
SKA3Q8IX90 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SKA3Q8IX90 AP001541.1-201ENST00000623322 1904 ntBASIC5.48□□□□□ -1.53
SKA3Q8IX90 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
SKA3Q8IX90 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
SKA3Q8IX90 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SKA3Q8IX90 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC5.48□□□□□ -1.53
SKA3Q8IX90 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
SKA3Q8IX90 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SKA3Q8IX90 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC5.48□□□□□ -1.53
SKA3Q8IX90 CLC-201ENST00000221804 635 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SKA3Q8IX90 AL442071.1-201ENST00000289890 558 ntTSL 3 BASIC5.48□□□□□ -1.53
SKA3Q8IX90 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SKA3Q8IX90 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC5.48□□□□□ -1.53
SKA3Q8IX90 VTI1BP4-201ENST00000427516 527 ntBASIC5.48□□□□□ -1.53
SKA3Q8IX90 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SKA3Q8IX90 AC013403.1-201ENST00000436954 263 ntBASIC5.48□□□□□ -1.53
SKA3Q8IX90 AC096632.2-201ENST00000438139 1239 ntBASIC5.48□□□□□ -1.53
SKA3Q8IX90 RPL5P10-201ENST00000445207 894 ntBASIC5.48□□□□□ -1.53
SKA3Q8IX90 AC007383.1-201ENST00000445875 636 ntBASIC5.48□□□□□ -1.53
SKA3Q8IX90 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC5.48□□□□□ -1.53
SKA3Q8IX90 AC103563.5-201ENST00000455643 364 ntBASIC5.48□□□□□ -1.53
SKA3Q8IX90 Z83838.1-202ENST00000456225 839 ntBASIC5.48□□□□□ -1.53
SKA3Q8IX90 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC5.48□□□□□ -1.53
SKA3Q8IX90 RN7SL221P-201ENST00000466190 281 ntBASIC5.48□□□□□ -1.53
SKA3Q8IX90 AC005017.1-201ENST00000482002 490 ntBASIC5.48□□□□□ -1.53
SKA3Q8IX90 RPL9P15-201ENST00000491096 532 ntBASIC5.48□□□□□ -1.53
SKA3Q8IX90 AC106822.1-201ENST00000502647 526 ntBASIC5.48□□□□□ -1.53
SKA3Q8IX90 AC092349.1-201ENST00000504903 310 ntBASIC5.48□□□□□ -1.53
SKA3Q8IX90 RNA5SP400-201ENST00000517155 111 ntBASIC5.48□□□□□ -1.53
SKA3Q8IX90 AP003033.2-201ENST00000528901 805 ntBASIC5.48□□□□□ -1.53
SKA3Q8IX90 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC5.48□□□□□ -1.53
SKA3Q8IX90 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC5.48□□□□□ -1.53
SKA3Q8IX90 AL355838.1-201ENST00000554814 559 ntTSL 4 BASIC5.48□□□□□ -1.53
SKA3Q8IX90 HMGN2P47-201ENST00000559378 272 ntBASIC5.48□□□□□ -1.53
SKA3Q8IX90 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC5.48□□□□□ -1.53
SKA3Q8IX90 AC005736.2-201ENST00000571302 774 ntTSL 2 BASIC5.48□□□□□ -1.53
SKA3Q8IX90 AC027229.1-201ENST00000583887 253 ntBASIC5.48□□□□□ -1.53
SKA3Q8IX90 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC5.48□□□□□ -1.53
SKA3Q8IX90 AC002069.2-201ENST00000603580 883 ntBASIC5.48□□□□□ -1.53
SKA3Q8IX90 RPSAP75-201ENST00000605848 301 ntBASIC5.48□□□□□ -1.53
SKA3Q8IX90 uc_338.29-201ENST00000615099 168 ntBASIC5.48□□□□□ -1.53
SKA3Q8IX90 AL009031.1-202ENST00000632370 886 ntTSL 3 BASIC5.48□□□□□ -1.53
SKA3Q8IX90 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SKA3Q8IX90 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
SKA3Q8IX90 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC5.48□□□□□ -1.53
SKA3Q8IX90 DCN-218ENST00000551354 2924 ntTSL 3 BASIC5.48□□□□□ -1.53
SKA3Q8IX90 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
SKA3Q8IX90 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC5.48□□□□□ -1.53
SKA3Q8IX90 CASC19-260ENST00000641828 2001 ntBASIC5.48□□□□□ -1.53
SKA3Q8IX90 AL355488.2-201ENST00000609909 2850 ntBASIC5.48□□□□□ -1.53
SKA3Q8IX90 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SKA3Q8IX90 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.48□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms