RNA–Protein interactions for RNA: ENST00000229387.6

RFX4-201, Transcript of regulatory factor X4, humanhuman

TSL 1 (best) BASIC

Gene RFX4, Length 3,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4-201ENST00000229387 CHIC1Q5VXU3 224 aa11.39□□□□□ -0.59
RFX4-201ENST00000229387 AEBP2Q6ZN18 517 aaPredicted RBP11.12□□□□□ -0.63
RFX4-201ENST00000229387 NISCHQ9Y2I1 1504 aa10.69□□□□□ -0.7
RFX4-201ENST00000229387 EHMT2Q96KQ7 1210 aa10.55□□□□□ -0.72
RFX4-201ENST00000229387 SLC24A1O60721 1099 aa10.4□□□□□ -0.74
RFX4-201ENST00000229387 PHF23Q9BUL5 403 aaPredicted RBP10.39□□□□□ -0.75
RFX4-201ENST00000229387 PELP1Q8IZL8 1130 aaKnown RBP10.34□□□□□ -0.75
RFX4-201ENST00000229387 MYT1Q01538 1121 aa10.23□□□□□ -0.77
RFX4-201ENST00000229387 PLPPR3Q6T4P5 718 aa10.08□□□□□ -0.8
RFX4-201ENST00000229387 SENP3Q9H4L4 574 aaPredicted RBP9.95□□□□□ -0.82
RFX4-201ENST00000229387 TTBK1Q5TCY1 1321 aaPredicted RBP9.88□□□□□ -0.83
RFX4-201ENST00000229387 RTN4Q9NQC3 1192 aaKnown RBP9.83□□□□□ -0.84
RFX4-201ENST00000229387 KCNA4P22459 653 aa9.83□□□□□ -0.84
RFX4-201ENST00000229387 POTEDQ86YR6 584 aa9.77□□□□□ -0.85
RFX4-201ENST00000229387 CSRNP3Q8WYN3 585 aa9.75□□□□□ -0.85
RFX4-201ENST00000229387 SHROOM4Q9ULL8 1493 aa9.56□□□□□ -0.88
RFX4-201ENST00000229387 DCAF8L2P0C7V8 631 aa9.49□□□□□ -0.89
RFX4-201ENST00000229387 HRCP23327 699 aa9.49□□□□□ -0.89
RFX4-201ENST00000229387 ADRA2BP18089 450 aa9.44□□□□□ -0.9
RFX4-201ENST00000229387 PRKCSHP14314 528 aaPredicted RBP9.39□□□□□ -0.91
RFX4-201ENST00000229387 AMER1Q5JTC6 1135 aaPredicted RBP9.37□□□□□ -0.91
RFX4-201ENST00000229387 SUPT5HO00267 1087 aaKnown RBP9.35□□□□□ -0.91
RFX4-201ENST00000229387 SLC4A1APQ9BWU0 796 aaKnown RBP9.34□□□□□ -0.91
RFX4-201ENST00000229387 ERICH6Q7L0X2 663 aa9.33□□□□□ -0.92
RFX4-201ENST00000229387 APLP2Q06481 763 aa9.32□□□□□ -0.92
RFX4-201ENST00000229387 SCAF1Q9H7N4 1312 aaKnown RBP9.27□□□□□ -0.93
RFX4-201ENST00000229387 NCBP3Q53F19 620 aaKnown RBP9.19□□□□□ -0.94
RFX4-201ENST00000229387 BCL11AQ9H165 835 aa9.19□□□□□ -0.94
RFX4-201ENST00000229387 ZBTB22O15209 634 aa9.15□□□□□ -0.95
RFX4-201ENST00000229387 FOXD1Q16676 465 aa9.12□□□□□ -0.95
RFX4-201ENST00000229387 MSH5O43196 834 aa9.1□□□□□ -0.95
RFX4-201ENST00000229387 FAM9AQ8IZU1 332 aaPredicted RBP9.05□□□□□ -0.96
RFX4-201ENST00000229387 PPARGC1BQ86YN6 1023 aaKnown RBP9.02□□□□□ -0.97
RFX4-201ENST00000229387 CENPBP07199 599 aaPredicted RBP8.99□□□□□ -0.97
RFX4-201ENST00000229387 DAXXQ9UER7 740 aaPredicted RBP8.99□□□□□ -0.97
RFX4-201ENST00000229387 PPP6R1Q9UPN7 881 aa8.99□□□□□ -0.97
RFX4-201ENST00000229387 ZCCHC6Q5VYS8 1495 aaKnown RBP8.98□□□□□ -0.97
RFX4-201ENST00000229387 TIMELESSQ9UNS1 1208 aa8.92□□□□□ -0.98
RFX4-201ENST00000229387 CCDC180Q9P1Z9 1646 aa8.91□□□□□ -0.98
RFX4-201ENST00000229387 ACIN1Q9UKV3 1341 aaKnown RBP8.9□□□□□ -0.98
RFX4-201ENST00000229387 TAOK2Q9UL54 1235 aa8.88□□□□□ -0.99
RFX4-201ENST00000229387 NPM3O75607 178 aaKnown RBP8.84□□□□□ -0.99
RFX4-201ENST00000229387 TULP1O00294 542 aaPredicted RBP8.82□□□□□ -1
RFX4-201ENST00000229387 TPRNQ4KMQ1 711 aa8.82□□□□□ -1
RFX4-201ENST00000229387 ZEB1P37275 1124 aaPredicted RBP8.81□□□□□ -1
RFX4-201ENST00000229387 ANP32EQ9BTT0 268 aa8.79□□□□□ -1
RFX4-201ENST00000229387 ABCC9O60706 1549 aa8.79□□□□□ -1
RFX4-201ENST00000229387 PCGF6Q9BYE7 350 aa8.78□□□□□ -1
RFX4-201ENST00000229387 FKBP8Q14318 412 aa8.78□□□□□ -1
RFX4-201ENST00000229387 LOC105371045A0A1W2PR82 267 aa8.77□□□□□ -1.01
RFX4-201ENST00000229387 GTF3C3Q9Y5Q9 886 aa8.76□□□□□ -1.01
RFX4-201ENST00000229387 MYO15BQ96JP2 1530 aa8.76□□□□□ -1.01
RFX4-201ENST00000229387 HAP1P54257 671 aaPredicted RBP8.75□□□□□ -1.01
RFX4-201ENST00000229387 PLCB2Q00722 1185 aa8.75□□□□□ -1.01
RFX4-201ENST00000229387 NEUROD1Q13562 356 aa8.75□□□□□ -1.01
RFX4-201ENST00000229387 PPP4R3CPQ6ZMV5 832 aa8.72□□□□□ -1.01
RFX4-201ENST00000229387 BCANQ96GW7 911 aa8.72□□□□□ -1.01
RFX4-201ENST00000229387 EIF5BO60841 1220 aaKnown RBP8.68□□□□□ -1.02
RFX4-201ENST00000229387 SCRIBQ14160 1630 aa8.67□□□□□ -1.02
RFX4-201ENST00000229387 UBE2Q2Q8WVN8 375 aa8.62□□□□□ -1.03
RFX4-201ENST00000229387 DCAF1Q9Y4B6 1507 aa8.62□□□□□ -1.03
RFX4-201ENST00000229387 ARXQ96QS3 562 aa8.59□□□□□ -1.03
RFX4-201ENST00000229387 TRIM41Q8WV44 630 aa8.58□□□□□ -1.04
RFX4-201ENST00000229387 PABPN1Q86U42 306 aaKnown RBP eCLIP8.56□□□□□ -1.04
RFX4-201ENST00000229387 RSF1Q96T23 1441 aaPredicted RBP8.54□□□□□ -1.04
RFX4-201ENST00000229387 CECR2Q9BXF3 1484 aa8.53□□□□□ -1.04
RFX4-201ENST00000229387 FBLN2P98095 1184 aa8.51□□□□□ -1.05
RFX4-201ENST00000229387 TRIM26Q12899 539 aaPredicted RBP8.51□□□□□ -1.05
RFX4-201ENST00000229387 KDM2AQ9Y2K7 1162 aa8.5□□□□□ -1.05
RFX4-201ENST00000229387 FOXD4L1Q9NU39 408 aa8.48□□□□□ -1.05
RFX4-201ENST00000229387 ANO8Q9HCE9 1232 aaPredicted RBP8.47□□□□□ -1.05
RFX4-201ENST00000229387 CLSPNQ9HAW4 1339 aa8.46□□□□□ -1.06
RFX4-201ENST00000229387 PIAS4Q8N2W9 510 aaPredicted RBP8.44□□□□□ -1.06
RFX4-201ENST00000229387 RB1CC1Q8TDY2 1594 aa8.43□□□□□ -1.06
RFX4-201ENST00000229387 ERICH6BQ5W0A0 696 aa8.42□□□□□ -1.06
RFX4-201ENST00000229387 HOMEZQ8IX15 550 aa8.42□□□□□ -1.06
RFX4-201ENST00000229387 MROH2BQ7Z745 1585 aa8.41□□□□□ -1.06
RFX4-201ENST00000229387 PODXL2Q9NZ53 605 aa8.41□□□□□ -1.06
RFX4-201ENST00000229387 MYT1LQ9UL68 1186 aa8.41□□□□□ -1.06
RFX4-201ENST00000229387 TSHZ2Q9NRE2 1034 aa8.39□□□□□ -1.07
RFX4-201ENST00000229387 KLHL34Q8N239 644 aa8.37□□□□□ -1.07
RFX4-201ENST00000229387 PLEKHG5O94827 1062 aa8.37□□□□□ -1.07
RFX4-201ENST00000229387 RANGAP1P46060 587 aaPredicted RBP8.35□□□□□ -1.07
RFX4-201ENST00000229387 PKNOX2Q96KN3 472 aa8.35□□□□□ -1.07
RFX4-201ENST00000229387 NACADO15069 1562 aa8.34□□□□□ -1.07
RFX4-201ENST00000229387 WIZO95785 1651 aa8.33□□□□□ -1.08
RFX4-201ENST00000229387 DIEXFQ68CQ4 756 aaKnown RBP8.33□□□□□ -1.08
RFX4-201ENST00000229387 VSIG10Q8N0Z9 540 aa8.32□□□□□ -1.08
RFX4-201ENST00000229387 SALL2Q9Y467 1007 aaPredicted RBP8.28□□□□□ -1.08
RFX4-201ENST00000229387 TMEM132AQ24JP5 1023 aa8.28□□□□□ -1.08
RFX4-201ENST00000229387 C14orf37Q86TY3 774 aa8.26□□□□□ -1.09
RFX4-201ENST00000229387 UBTFP17480 764 aaKnown RBP8.24□□□□□ -1.09
RFX4-201ENST00000229387 SUPT16HQ9Y5B9 1047 aaKnown RBP8.24□□□□□ -1.09
RFX4-201ENST00000229387 ABCC8Q09428 1581 aa8.23□□□□□ -1.09
RFX4-201ENST00000229387 CFAP44Q96MT7 982 aa8.21□□□□□ -1.09
RFX4-201ENST00000229387 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.21□□□□□ -1.1
RFX4-201ENST00000229387 CCDC88BA6NC98 1476 aa8.2□□□□□ -1.1
RFX4-201ENST00000229387 SOGA1O94964 1423 aa8.19□□□□□ -1.1
RFX4-201ENST00000229387 PAXIP1Q6ZW49 1069 aaPredicted RBP8.19□□□□□ -1.1
RFX4-201ENST00000229387 BAZ1AQ9NRL2 1556 aaPredicted RBP8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms