Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 NEK2P2-201ENST00000438441 1338 ntBASIC5.16□□□□□ -1.58
CX3CL1P78423 EEF1A1P12-201ENST00000443590 1346 ntBASIC5.16□□□□□ -1.58
CX3CL1P78423 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
CX3CL1P78423 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC5.16□□□□□ -1.58
CX3CL1P78423 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC5.16□□□□□ -1.58
CX3CL1P78423 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC5.16□□□□□ -1.58
CX3CL1P78423 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
CX3CL1P78423 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CX3CL1P78423 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC5.16□□□□□ -1.58
CX3CL1P78423 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
CX3CL1P78423 AC074141.1-201ENST00000588129 2995 ntBASIC5.16□□□□□ -1.58
CX3CL1P78423 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC5.16□□□□□ -1.58
CX3CL1P78423 AC119674.1-213ENST00000641177 1386 ntBASIC5.16□□□□□ -1.58
CX3CL1P78423 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
CX3CL1P78423 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
CX3CL1P78423 CASP5-201ENST00000260315 1414 ntTSL 5 BASIC5.15□□□□□ -1.58
CX3CL1P78423 DDX6P1-205ENST00000441966 1436 ntBASIC5.15□□□□□ -1.58
CX3CL1P78423 TRIM49D1-203ENST00000605881 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.58
CX3CL1P78423 AL035665.1-201ENST00000428495 1669 ntTSL 3 BASIC5.15□□□□□ -1.58
CX3CL1P78423 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC5.15□□□□□ -1.58
CX3CL1P78423 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
CX3CL1P78423 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
CX3CL1P78423 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
CX3CL1P78423 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
CX3CL1P78423 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC5.15□□□□□ -1.58
CX3CL1P78423 PLEKHA5-216ENST00000540972 1954 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
CX3CL1P78423 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
CX3CL1P78423 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
CX3CL1P78423 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC5.15□□□□□ -1.59
CX3CL1P78423 MTHFD2P5-201ENST00000320415 844 ntBASIC5.15□□□□□ -1.59
CX3CL1P78423 NOP10-201ENST00000328848 554 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
CX3CL1P78423 FAM183A-201ENST00000335282 488 ntAPPRIS P1 TSL 2 BASIC5.15□□□□□ -1.59
CX3CL1P78423 HHLA3-201ENST00000359875 898 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.59
CX3CL1P78423 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC5.15□□□□□ -1.59
CX3CL1P78423 LCN1P2-201ENST00000372030 223 ntBASIC5.15□□□□□ -1.59
CX3CL1P78423 AL033519.1-201ENST00000407266 307 ntBASIC5.15□□□□□ -1.59
CX3CL1P78423 FAM183A-205ENST00000410048 500 ntTSL 3 BASIC5.15□□□□□ -1.59
CX3CL1P78423 AL050344.1-201ENST00000424084 490 ntTSL 3 BASIC5.15□□□□□ -1.59
CX3CL1P78423 EIF2S2P3-201ENST00000428356 999 ntBASIC5.15□□□□□ -1.59
CX3CL1P78423 AL022324.2-201ENST00000434827 780 ntBASIC5.15□□□□□ -1.59
CX3CL1P78423 SCP2-207ENST00000435345 894 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
CX3CL1P78423 AL645939.3-201ENST00000435408 225 ntBASIC5.15□□□□□ -1.59
CX3CL1P78423 GAPDHP37-201ENST00000442317 968 ntBASIC5.15□□□□□ -1.59
CX3CL1P78423 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC5.15□□□□□ -1.59
CX3CL1P78423 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC5.15□□□□□ -1.59
CX3CL1P78423 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
CX3CL1P78423 AC022498.1-201ENST00000449845 696 ntTSL 3 BASIC5.15□□□□□ -1.59
CX3CL1P78423 AC211433.1-201ENST00000450426 686 ntTSL 4 BASIC5.15□□□□□ -1.59
CX3CL1P78423 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC5.15□□□□□ -1.59
CX3CL1P78423 AL353718.1-201ENST00000451028 517 ntBASIC5.15□□□□□ -1.59
CX3CL1P78423 KCNIP2-211ENST00000461105 858 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
CX3CL1P78423 AC128689.1-201ENST00000466206 562 ntTSL 4 BASIC5.15□□□□□ -1.59
CX3CL1P78423 AC090543.1-201ENST00000492168 485 ntBASIC5.15□□□□□ -1.59
CX3CL1P78423 AC114324.2-202ENST00000503812 134 ntBASIC5.15□□□□□ -1.59
CX3CL1P78423 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC5.15□□□□□ -1.59
CX3CL1P78423 AC113191.1-201ENST00000517759 403 ntBASIC5.15□□□□□ -1.59
CX3CL1P78423 IGKV2-19-201ENST00000518132 283 ntBASIC5.15□□□□□ -1.59
CX3CL1P78423 AC107909.1-201ENST00000523226 595 ntTSL 5 BASIC5.15□□□□□ -1.59
CX3CL1P78423 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC5.15□□□□□ -1.59
CX3CL1P78423 TMEM116-208ENST00000549537 1229 ntAPPRIS ALT2 TSL 2 BASIC5.15□□□□□ -1.59
CX3CL1P78423 HNRNPCP1-201ENST00000556181 766 ntBASIC5.15□□□□□ -1.59
CX3CL1P78423 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
CX3CL1P78423 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC5.15□□□□□ -1.59
CX3CL1P78423 LYRM1-208ENST00000567954 460 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
CX3CL1P78423 MIR4732-201ENST00000581873 76 ntBASIC5.15□□□□□ -1.59
CX3CL1P78423 SYPL1P2-201ENST00000582878 727 ntBASIC5.15□□□□□ -1.59
CX3CL1P78423 CHMP1B-AS1-201ENST00000586474 553 ntTSL 4 BASIC5.15□□□□□ -1.59
CX3CL1P78423 AC007786.1-202ENST00000590607 443 ntTSL 3 BASIC5.15□□□□□ -1.59
CX3CL1P78423 AC040170.1-201ENST00000602425 564 ntTSL 2 BASIC5.15□□□□□ -1.59
CX3CL1P78423 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC5.15□□□□□ -1.59
CX3CL1P78423 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC5.15□□□□□ -1.59
CX3CL1P78423 MIR6085-201ENST00000618314 110 ntBASIC5.15□□□□□ -1.59
CX3CL1P78423 AC068213.1-201ENST00000625124 226 ntBASIC5.15□□□□□ -1.59
CX3CL1P78423 GABRA2-215ENST00000540012 2588 ntTSL 5 BASIC5.15□□□□□ -1.59
CX3CL1P78423 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC5.15□□□□□ -1.59
CX3CL1P78423 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC5.15□□□□□ -1.59
CX3CL1P78423 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
CX3CL1P78423 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
CX3CL1P78423 AC011369.2-201ENST00000624423 1567 ntBASIC5.15□□□□□ -1.59
CX3CL1P78423 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC5.15□□□□□ -1.59
CX3CL1P78423 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
CX3CL1P78423 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
CX3CL1P78423 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.59
CX3CL1P78423 DDX47-201ENST00000352940 1698 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
CX3CL1P78423 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
CX3CL1P78423 AC005702.3-201ENST00000585345 1447 ntBASIC5.14□□□□□ -1.59
CX3CL1P78423 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC5.14□□□□□ -1.59
CX3CL1P78423 GPR1-209ENST00000612892 2565 ntAPPRIS P1 TSL 4 BASIC5.14□□□□□ -1.59
CX3CL1P78423 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CX3CL1P78423 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC5.14□□□□□ -1.59
CX3CL1P78423 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CX3CL1P78423 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
CX3CL1P78423 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
CX3CL1P78423 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
CX3CL1P78423 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
CX3CL1P78423 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
CX3CL1P78423 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CX3CL1P78423 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CX3CL1P78423 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
CX3CL1P78423 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms