Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 FAM71F1-209ENST00000621392 1591 ntTSL 5 BASIC9.83□□□□□ -0.84
CUX1P39880 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
CUX1P39880 CLEC2D-203ENST00000290855 5279 ntAPPRIS P3 TSL 1 (best) BASIC9.83□□□□□ -0.84
CUX1P39880 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC9.83□□□□□ -0.84
CUX1P39880 Y_RNA.625-201ENST00000411256 107 ntBASIC9.83□□□□□ -0.84
CUX1P39880 AC015977.1-201ENST00000418887 292 ntBASIC9.83□□□□□ -0.84
CUX1P39880 NENFP1-201ENST00000419476 466 ntBASIC9.83□□□□□ -0.84
CUX1P39880 CYCSP12-201ENST00000437729 300 ntBASIC9.83□□□□□ -0.84
CUX1P39880 BZW1P1-201ENST00000454901 1240 ntBASIC9.83□□□□□ -0.84
CUX1P39880 SCARNA6.1-201ENST00000516989 238 ntBASIC9.83□□□□□ -0.84
CUX1P39880 EIF4A2P5-201ENST00000529914 499 ntBASIC9.83□□□□□ -0.84
CUX1P39880 OR4A42P-201ENST00000531397 938 ntBASIC9.83□□□□□ -0.84
CUX1P39880 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC9.83□□□□□ -0.84
CUX1P39880 LINC02310-201ENST00000556762 572 ntTSL 4 BASIC9.83□□□□□ -0.84
CUX1P39880 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC9.83□□□□□ -0.84
CUX1P39880 RPSAP73-201ENST00000614820 330 ntBASIC9.83□□□□□ -0.84
CUX1P39880 AC008115.3-201ENST00000614874 549 ntBASIC9.83□□□□□ -0.84
CUX1P39880 ZNF720-202ENST00000398696 1339 ntTSL 4 BASIC9.83□□□□□ -0.84
CUX1P39880 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC9.83□□□□□ -0.84
CUX1P39880 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
CUX1P39880 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
CUX1P39880 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
CUX1P39880 PDE4B-207ENST00000480109 2037 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
CUX1P39880 ZNF451-204ENST00000370708 9478 ntTSL 2 BASIC9.83□□□□□ -0.84
CUX1P39880 SPIRE1-206ENST00000453447 2107 ntTSL 5 BASIC9.83□□□□□ -0.84
CUX1P39880 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC9.83□□□□□ -0.84
CUX1P39880 GRIA4-212ENST00000530497 5059 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
CUX1P39880 FAM32BP-201ENST00000344033 333 ntBASIC9.82□□□□□ -0.84
CUX1P39880 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC9.82□□□□□ -0.84
CUX1P39880 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC9.82□□□□□ -0.84
CUX1P39880 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC9.82□□□□□ -0.84
CUX1P39880 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC9.82□□□□□ -0.84
CUX1P39880 RN7SL172P-201ENST00000460535 303 ntBASIC9.82□□□□□ -0.84
CUX1P39880 RPS4XP1-201ENST00000482189 787 ntBASIC9.82□□□□□ -0.84
CUX1P39880 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
CUX1P39880 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC9.82□□□□□ -0.84
CUX1P39880 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC9.82□□□□□ -0.84
CUX1P39880 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC9.82□□□□□ -0.84
CUX1P39880 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC9.82□□□□□ -0.84
CUX1P39880 AC024589.2-201ENST00000605642 1294 ntBASIC9.82□□□□□ -0.84
CUX1P39880 Mico1.1-201ENST00000611698 204 ntBASIC9.82□□□□□ -0.84
CUX1P39880 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC9.82□□□□□ -0.84
CUX1P39880 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
CUX1P39880 RPGRIP1L-202ENST00000379925 5297 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
CUX1P39880 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC9.82□□□□□ -0.84
CUX1P39880 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
CUX1P39880 FBXO40-201ENST00000338040 5929 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
CUX1P39880 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC9.82□□□□□ -0.84
CUX1P39880 GATAD2B-204ENST00000634544 2342 ntAPPRIS P1 TSL 5 BASIC9.82□□□□□ -0.84
CUX1P39880 POLH-201ENST00000372226 3322 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
CUX1P39880 ACSL5-201ENST00000354273 3353 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
CUX1P39880 RUNDC3A-AS1-202ENST00000588097 5203 ntTSL 5 BASIC9.82□□□□□ -0.84
CUX1P39880 MRPS27-202ENST00000457646 2628 ntTSL 2 BASIC9.82□□□□□ -0.84
CUX1P39880 VANGL1-204ENST00000369510 8647 ntAPPRIS ALT1 TSL 1 (best) BASIC9.82□□□□□ -0.84
CUX1P39880 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC9.82□□□□□ -0.84
CUX1P39880 SMARCA2-252ENST00000636559 6853 ntTSL 2 BASIC9.82□□□□□ -0.84
CUX1P39880 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC9.82□□□□□ -0.84
CUX1P39880 KCNJ15-220ENST00000612702 3046 ntAPPRIS P1 TSL 4 BASIC9.82□□□□□ -0.84
CUX1P39880 LINC01788-201ENST00000419450 2086 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
CUX1P39880 RUNX1T1-249ENST00000613886 7401 ntAPPRIS ALT1 TSL 5 BASIC9.82□□□□□ -0.84
CUX1P39880 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
CUX1P39880 BRD8-202ENST00000254900 4388 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
CUX1P39880 CNR1-202ENST00000369499 5549 ntAPPRIS P1 TSL 5 BASIC9.82□□□□□ -0.84
CUX1P39880 TMEM269-204ENST00000637012 3354 ntAPPRIS ALT2 TSL 5 BASIC9.82□□□□□ -0.84
CUX1P39880 TTC7B-201ENST00000328459 19458 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
CUX1P39880 DOCK2-211ENST00000520908 4654 ntTSL 2 BASIC9.82□□□□□ -0.84
CUX1P39880 ZCCHC2-204ENST00000586834 4765 ntAPPRIS ALT2 TSL 1 (best) BASIC9.82□□□□□ -0.84
CUX1P39880 RAB6C-AS1-201ENST00000412425 2454 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
CUX1P39880 STAMBP-201ENST00000339566 6277 ntAPPRIS P1 TSL 5 BASIC9.82□□□□□ -0.84
CUX1P39880 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
CUX1P39880 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC9.82□□□□□ -0.84
CUX1P39880 U8.4-201ENST00000363626 134 ntBASIC9.82□□□□□ -0.84
CUX1P39880 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC9.82□□□□□ -0.84
CUX1P39880 RN7SKP125-201ENST00000410481 302 ntBASIC9.82□□□□□ -0.84
CUX1P39880 VDAC2P4-201ENST00000452925 711 ntBASIC9.82□□□□□ -0.84
CUX1P39880 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
CUX1P39880 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC9.82□□□□□ -0.84
CUX1P39880 MIR6748-201ENST00000610433 71 ntBASIC9.82□□□□□ -0.84
CUX1P39880 TCL6_3.1-201ENST00000619064 137 ntBASIC9.82□□□□□ -0.84
CUX1P39880 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC9.81□□□□□ -0.84
CUX1P39880 AC104581.5-201ENST00000624171 7141 ntBASIC9.81□□□□□ -0.84
CUX1P39880 CD86-204ENST00000469710 1604 ntTSL 2 BASIC9.81□□□□□ -0.84
CUX1P39880 AFP-201ENST00000226359 1914 ntTSL 5 BASIC9.81□□□□□ -0.84
CUX1P39880 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC9.81□□□□□ -0.84
CUX1P39880 EPHA3-201ENST00000336596 5809 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
CUX1P39880 MBD5-201ENST00000404807 5920 ntTSL 5 BASIC9.81□□□□□ -0.84
CUX1P39880 LINC01616-201ENST00000561816 2280 ntBASIC9.81□□□□□ -0.84
CUX1P39880 ZNFX1-204ENST00000396105 7371 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
CUX1P39880 SCN8A-203ENST00000545061 11433 ntTSL 5 BASIC9.81□□□□□ -0.84
CUX1P39880 CNTRL-207ENST00000373855 7660 ntAPPRIS P1 TSL 5 BASIC9.81□□□□□ -0.84
CUX1P39880 ASH1L-202ENST00000392403 10979 ntAPPRIS P2 TSL 5 BASIC9.81□□□□□ -0.84
CUX1P39880 KCNA2-214ENST00000640774 6673 ntTSL 5 BASIC9.81□□□□□ -0.84
CUX1P39880 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC9.81□□□□□ -0.84
CUX1P39880 SUPT7L-202ENST00000404798 4114 ntTSL 2 BASIC9.81□□□□□ -0.84
CUX1P39880 CTNND1-207ENST00000426142 5800 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
CUX1P39880 AL451136.1-201ENST00000435399 325 ntBASIC9.81□□□□□ -0.84
CUX1P39880 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC9.81□□□□□ -0.84
CUX1P39880 FAR2P1-206ENST00000449736 709 ntBASIC9.81□□□□□ -0.84
CUX1P39880 AL606490.1-201ENST00000452266 765 ntBASIC9.81□□□□□ -0.84
CUX1P39880 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC9.81□□□□□ -0.84
Retrieved 100 of 98,524 protein–RNA pairs in 83.1 ms