RNA–Protein interactions for RNA: ENST00000336596.6

EPHA3-201, Transcript of EPH receptor A3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene EPHA3, Length 5,809 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA3-201ENST00000336596 NISCHQ9Y2I1 1504 aa13.59□□□□□ -0.23
EPHA3-201ENST00000336596 DCAF8L2P0C7V8 631 aa13.05□□□□□ -0.32
EPHA3-201ENST00000336596 FAM9AQ8IZU1 332 aaPredicted RBP12.28□□□□□ -0.44
EPHA3-201ENST00000336596 SHROOM4Q9ULL8 1493 aa12.24□□□□□ -0.45
EPHA3-201ENST00000336596 SUPT5HO00267 1087 aaKnown RBP12.13□□□□□ -0.47
EPHA3-201ENST00000336596 ABCC9O60706 1549 aa11.76□□□□□ -0.53
EPHA3-201ENST00000336596 APLP2Q06481 763 aa11.71□□□□□ -0.53
EPHA3-201ENST00000336596 CCDC180Q9P1Z9 1646 aa11.49□□□□□ -0.57
EPHA3-201ENST00000336596 EHMT2Q96KQ7 1210 aa11.49□□□□□ -0.57
EPHA3-201ENST00000336596 PABPN1Q86U42 306 aaKnown RBP eCLIP11.42□□□□□ -0.58
EPHA3-201ENST00000336596 TRIM41Q8WV44 630 aa11.32□□□□□ -0.6
EPHA3-201ENST00000336596 PELP1Q8IZL8 1130 aaKnown RBP11.27□□□□□ -0.6
EPHA3-201ENST00000336596 ZCCHC6Q5VYS8 1495 aaKnown RBP11.27□□□□□ -0.6
EPHA3-201ENST00000336596 SCRIBQ14160 1630 aa11.18□□□□□ -0.62
EPHA3-201ENST00000336596 RANGAP1P46060 587 aaPredicted RBP11.15□□□□□ -0.62
EPHA3-201ENST00000336596 ATP1B4Q9UN42 357 aaPredicted RBP11.14□□□□□ -0.63
EPHA3-201ENST00000336596 RB1CC1Q8TDY2 1594 aa11.13□□□□□ -0.63
EPHA3-201ENST00000336596 MYT1LQ9UL68 1186 aa11.1□□□□□ -0.63
EPHA3-201ENST00000336596 UBTFP17480 764 aaKnown RBP11.1□□□□□ -0.63
EPHA3-201ENST00000336596 NACADO15069 1562 aa11.06□□□□□ -0.64
EPHA3-201ENST00000336596 TTBK1Q5TCY1 1321 aaPredicted RBP11.02□□□□□ -0.65
EPHA3-201ENST00000336596 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.98□□□□□ -0.65
EPHA3-201ENST00000336596 HNRNPUL2Q1KMD3 747 aaKnown RBP10.98□□□□□ -0.65
EPHA3-201ENST00000336596 CHIC1Q5VXU3 224 aa10.94□□□□□ -0.66
EPHA3-201ENST00000336596 DCAF1Q9Y4B6 1507 aa10.89□□□□□ -0.67
EPHA3-201ENST00000336596 ZEB1P37275 1124 aaPredicted RBP10.83□□□□□ -0.68
EPHA3-201ENST00000336596 CCER1Q8TC90 406 aaPredicted RBP10.8□□□□□ -0.68
EPHA3-201ENST00000336596 PCGF6Q9BYE7 350 aa10.79□□□□□ -0.68
EPHA3-201ENST00000336596 LOC105371045A0A1W2PR82 267 aa10.77□□□□□ -0.69
EPHA3-201ENST00000336596 NPM1P06748 294 aaKnown RBP eCLIP10.73□□□□□ -0.69
EPHA3-201ENST00000336596 PPARGC1BQ86YN6 1023 aaKnown RBP10.72□□□□□ -0.69
EPHA3-201ENST00000336596 FBLN2P98095 1184 aa10.72□□□□□ -0.69
EPHA3-201ENST00000336596 MYO15BQ96JP2 1530 aa10.7□□□□□ -0.7
EPHA3-201ENST00000336596 RSF1Q96T23 1441 aaPredicted RBP10.7□□□□□ -0.7
EPHA3-201ENST00000336596 ESF1Q9H501 851 aaKnown RBP10.69□□□□□ -0.7
EPHA3-201ENST00000336596 BAZ1BQ9UIG0 1483 aaKnown RBP10.68□□□□□ -0.7
EPHA3-201ENST00000336596 BAZ1AQ9NRL2 1556 aaPredicted RBP10.66□□□□□ -0.7
EPHA3-201ENST00000336596 CDK11AQ9UQ88 783 aaPredicted RBP10.63□□□□□ -0.71
EPHA3-201ENST00000336596 CECR2Q9BXF3 1484 aa10.63□□□□□ -0.71
EPHA3-201ENST00000336596 CSRNP3Q8WYN3 585 aa10.6□□□□□ -0.71
EPHA3-201ENST00000336596 ITGAEP38570 1179 aa10.59□□□□□ -0.71
EPHA3-201ENST00000336596 NEFLP07196 543 aa10.56□□□□□ -0.72
EPHA3-201ENST00000336596 TRIM26Q12899 539 aaPredicted RBP10.54□□□□□ -0.72
EPHA3-201ENST00000336596 CENPBP07199 599 aaPredicted RBP10.54□□□□□ -0.72
EPHA3-201ENST00000336596 SLC4A1APQ9BWU0 796 aaKnown RBP10.51□□□□□ -0.73
EPHA3-201ENST00000336596 MROH2BQ7Z745 1585 aa10.5□□□□□ -0.73
EPHA3-201ENST00000336596 ERICH6Q7L0X2 663 aa10.5□□□□□ -0.73
EPHA3-201ENST00000336596 P3H3Q8IVL6 736 aa10.5□□□□□ -0.73
EPHA3-201ENST00000336596 BCANQ96GW7 911 aa10.5□□□□□ -0.73
EPHA3-201ENST00000336596 SMARCA2P51531 1590 aa10.5□□□□□ -0.73
EPHA3-201ENST00000336596 ERCC6Q03468 1493 aa10.49□□□□□ -0.73
EPHA3-201ENST00000336596 FAM50AQ14320 339 aaKnown RBP10.45□□□□□ -0.74
EPHA3-201ENST00000336596 NEFMP07197 916 aa10.44□□□□□ -0.74
EPHA3-201ENST00000336596 WRNQ14191 1432 aaPredicted RBP eCLIP10.44□□□□□ -0.74
EPHA3-201ENST00000336596 CHMP7Q8WUX9 453 aaPredicted RBP10.43□□□□□ -0.74
EPHA3-201ENST00000336596 ARID3CA6NKF2 412 aa10.43□□□□□ -0.74
EPHA3-201ENST00000336596 TRIM52Q96A61 297 aa10.41□□□□□ -0.74
EPHA3-201ENST00000336596 ACIN1Q9UKV3 1341 aaKnown RBP10.41□□□□□ -0.74
EPHA3-201ENST00000336596 STAG3Q9UJ98 1225 aa10.4□□□□□ -0.74
EPHA3-201ENST00000336596 POLR3GLQ9BT43 218 aa10.39□□□□□ -0.75
EPHA3-201ENST00000336596 WIZO95785 1651 aa10.38□□□□□ -0.75
EPHA3-201ENST00000336596 CCDC88BA6NC98 1476 aa10.37□□□□□ -0.75
EPHA3-201ENST00000336596 SMARCA4P51532 1647 aa10.37□□□□□ -0.75
EPHA3-201ENST00000336596 ATAD2BQ9ULI0 1458 aa10.36□□□□□ -0.75
EPHA3-201ENST00000336596 TOP2AP11388 1531 aaKnown RBP10.35□□□□□ -0.75
EPHA3-201ENST00000336596 PDS5BQ9NTI5 1447 aa10.34□□□□□ -0.75
EPHA3-201ENST00000336596 DAXXQ9UER7 740 aaPredicted RBP10.34□□□□□ -0.75
EPHA3-201ENST00000336596 KIF27Q86VH2 1401 aa10.33□□□□□ -0.76
EPHA3-201ENST00000336596 EEA1Q15075 1411 aa10.33□□□□□ -0.76
EPHA3-201ENST00000336596 ZBTB47Q9UFB7 747 aaPredicted RBP10.32□□□□□ -0.76
EPHA3-201ENST00000336596 ZNF777Q9ULD5 760 aaPredicted RBP10.29□□□□□ -0.76
EPHA3-201ENST00000336596 CADPSQ9ULU8 1353 aa10.28□□□□□ -0.76
EPHA3-201ENST00000336596 EIF4G1Q04637 1599 aaKnown RBP10.26□□□□□ -0.77
EPHA3-201ENST00000336596 GOLGA3Q08378 1498 aa10.25□□□□□ -0.77
EPHA3-201ENST00000336596 CUX2O14529 1486 aa10.24□□□□□ -0.77
EPHA3-201ENST00000336596 CLIP1P30622 1438 aa10.24□□□□□ -0.77
EPHA3-201ENST00000336596 ABCC8Q09428 1581 aa10.22□□□□□ -0.77
EPHA3-201ENST00000336596 CEP164Q9UPV0 1460 aa10.21□□□□□ -0.77
EPHA3-201ENST00000336596 SOGA1O94964 1423 aa10.2□□□□□ -0.78
EPHA3-201ENST00000336596 NCAPD3P42695 1498 aa10.19□□□□□ -0.78
EPHA3-201ENST00000336596 MTUS2Q5JR59 1369 aa10.18□□□□□ -0.78
EPHA3-201ENST00000336596 CARMIL1Q5VZK9 1371 aa10.18□□□□□ -0.78
EPHA3-201ENST00000336596 TSPY4P0CV99 314 aa10.18□□□□□ -0.78
EPHA3-201ENST00000336596 TSPY10P0CW01 314 aa10.18□□□□□ -0.78
EPHA3-201ENST00000336596 NEUROD1Q13562 356 aa10.17□□□□□ -0.78
EPHA3-201ENST00000336596 TDRD9Q8NDG6 1382 aaKnown RBP10.16□□□□□ -0.78
EPHA3-201ENST00000336596 FANCD2Q9BXW9 1451 aa10.16□□□□□ -0.78
EPHA3-201ENST00000336596 CEP162Q5TB80 1403 aa10.16□□□□□ -0.78
EPHA3-201ENST00000336596 SLC24A1O60721 1099 aa10.15□□□□□ -0.78
EPHA3-201ENST00000336596 ARID4BQ4LE39 1312 aaPredicted RBP10.14□□□□□ -0.79
EPHA3-201ENST00000336596 HRCP23327 699 aa10.14□□□□□ -0.79
EPHA3-201ENST00000336596 HDGFP51858 240 aaKnown RBP10.14□□□□□ -0.79
EPHA3-201ENST00000336596 TNIKQ9UKE5 1360 aa10.14□□□□□ -0.79
EPHA3-201ENST00000336596 CHGAP10645 457 aaKnown RBP10.13□□□□□ -0.79
EPHA3-201ENST00000336596 PLEKHD1A6NEE1 506 aa10.13□□□□□ -0.79
EPHA3-201ENST00000336596 PPP1R15AO75807 674 aaPredicted RBP10.13□□□□□ -0.79
EPHA3-201ENST00000336596 KCNH8Q96L42 1107 aa10.13□□□□□ -0.79
EPHA3-201ENST00000336596 CC2D2AQ9P2K1 1620 aa10.13□□□□□ -0.79
EPHA3-201ENST00000336596 YTHDC1Q96MU7 727 aaKnown RBP10.11□□□□□ -0.79
EPHA3-201ENST00000336596 BICRAQ9NZM4 1560 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms