Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 IGHVIII-13-1-201ENST00000517613 291 ntBASIC7.93□□□□□ -1.14
HOXC9P31274 OR4H6P-201ENST00000563771 921 ntBASIC7.93□□□□□ -1.14
HOXC9P31274 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC7.93□□□□□ -1.14
HOXC9P31274 AC013244.1-201ENST00000604279 193 ntBASIC7.93□□□□□ -1.14
HOXC9P31274 AL445670.1-201ENST00000618889 801 ntBASIC7.93□□□□□ -1.14
HOXC9P31274 OR11H2-202ENST00000641517 1085 ntBASIC7.93□□□□□ -1.14
HOXC9P31274 AC087269.2-201ENST00000641764 975 ntBASIC7.93□□□□□ -1.14
HOXC9P31274 PRDM2-201ENST00000235372 7957 ntAPPRIS P4 TSL 1 (best) BASIC7.93□□□□□ -1.14
HOXC9P31274 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
HOXC9P31274 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
HOXC9P31274 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC7.93□□□□□ -1.14
HOXC9P31274 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
HOXC9P31274 AC027279.4-201ENST00000624371 2072 ntBASIC7.93□□□□□ -1.14
HOXC9P31274 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC7.93□□□□□ -1.14
HOXC9P31274 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC7.93□□□□□ -1.14
HOXC9P31274 BDNF-212ENST00000525528 4766 ntAPPRIS P1 BASIC7.93□□□□□ -1.14
HOXC9P31274 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC7.92□□□□□ -1.14
HOXC9P31274 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC7.92□□□□□ -1.14
HOXC9P31274 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
HOXC9P31274 OR51E1-201ENST00000396952 3612 ntAPPRIS P1 BASIC7.92□□□□□ -1.14
HOXC9P31274 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC7.92□□□□□ -1.14
HOXC9P31274 OR7A10-202ENST00000641129 1847 ntAPPRIS P1 BASIC7.92□□□□□ -1.14
HOXC9P31274 ACSL5-203ENST00000356116 3353 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
HOXC9P31274 TLK2-214ENST00000582809 3608 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
HOXC9P31274 UPF2-203ENST00000397053 5369 ntAPPRIS P1 TSL 5 BASIC7.92□□□□□ -1.14
HOXC9P31274 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC7.92□□□□□ -1.14
HOXC9P31274 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC7.92□□□□□ -1.14
HOXC9P31274 Z93019.1-201ENST00000416450 973 ntBASIC7.92□□□□□ -1.14
HOXC9P31274 RPS12P17-201ENST00000438591 377 ntBASIC7.92□□□□□ -1.14
HOXC9P31274 EIF3LP3-201ENST00000495197 822 ntBASIC7.92□□□□□ -1.14
HOXC9P31274 IGKV2-18-201ENST00000522607 343 ntBASIC7.92□□□□□ -1.14
HOXC9P31274 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC7.92□□□□□ -1.14
HOXC9P31274 OR4A40P-201ENST00000533878 948 ntBASIC7.92□□□□□ -1.14
HOXC9P31274 AC127526.3-201ENST00000534291 450 ntTSL 3 BASIC7.92□□□□□ -1.14
HOXC9P31274 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC7.92□□□□□ -1.14
HOXC9P31274 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC7.92□□□□□ -1.14
HOXC9P31274 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC7.92□□□□□ -1.14
HOXC9P31274 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC7.92□□□□□ -1.14
HOXC9P31274 MIR6719-201ENST00000622428 87 ntBASIC7.92□□□□□ -1.14
HOXC9P31274 AC087565.3-203ENST00000641018 837 ntBASIC7.92□□□□□ -1.14
HOXC9P31274 CCR9-204ENST00000422395 1331 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
HOXC9P31274 HYAL4-201ENST00000223026 2407 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
HOXC9P31274 MTIF2-201ENST00000263629 2528 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
HOXC9P31274 PRLR-212ENST00000513753 1525 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
HOXC9P31274 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC7.92□□□□□ -1.14
HOXC9P31274 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
HOXC9P31274 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC7.92□□□□□ -1.14
HOXC9P31274 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC7.91□□□□□ -1.14
HOXC9P31274 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC7.91□□□□□ -1.14
HOXC9P31274 IFT74-204ENST00000443698 2163 ntAPPRIS P1 TSL 5 BASIC7.91□□□□□ -1.14
HOXC9P31274 ZNF385B-201ENST00000336917 2610 ntTSL 5 BASIC7.91□□□□□ -1.14
HOXC9P31274 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC7.91□□□□□ -1.14
HOXC9P31274 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
HOXC9P31274 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
HOXC9P31274 CEP290-207ENST00000552810 7948 ntAPPRIS P2 TSL 1 (best) BASIC7.91□□□□□ -1.14
HOXC9P31274 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC7.91□□□□□ -1.14
HOXC9P31274 AMELX-201ENST00000348912 737 ntTSL 5 BASIC7.91□□□□□ -1.14
HOXC9P31274 RNA5SP211-201ENST00000365516 117 ntBASIC7.91□□□□□ -1.14
HOXC9P31274 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
HOXC9P31274 RN7SKP166-201ENST00000410812 305 ntBASIC7.91□□□□□ -1.14
HOXC9P31274 LINC02257-201ENST00000412445 605 ntTSL 2 BASIC7.91□□□□□ -1.14
HOXC9P31274 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC7.91□□□□□ -1.14
HOXC9P31274 AC099677.3-201ENST00000427081 395 ntBASIC7.91□□□□□ -1.14
HOXC9P31274 AC092801.1-201ENST00000443763 581 ntTSL 3 BASIC7.91□□□□□ -1.14
HOXC9P31274 EEF1B2P6-201ENST00000445713 673 ntBASIC7.91□□□□□ -1.14
HOXC9P31274 AL157777.1-201ENST00000468100 304 ntBASIC7.91□□□□□ -1.14
HOXC9P31274 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC7.91□□□□□ -1.14
HOXC9P31274 DUTP7-201ENST00000507982 486 ntBASIC7.91□□□□□ -1.14
HOXC9P31274 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC7.91□□□□□ -1.14
HOXC9P31274 SNORA43.3-201ENST00000517240 103 ntBASIC7.91□□□□□ -1.14
HOXC9P31274 TPM3P3-201ENST00000521343 354 ntBASIC7.91□□□□□ -1.14
HOXC9P31274 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC7.91□□□□□ -1.14
HOXC9P31274 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC7.91□□□□□ -1.14
HOXC9P31274 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC7.91□□□□□ -1.14
HOXC9P31274 TXNP4-201ENST00000575018 310 ntBASIC7.91□□□□□ -1.14
HOXC9P31274 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC7.91□□□□□ -1.14
HOXC9P31274 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC7.91□□□□□ -1.14
HOXC9P31274 CU639417.4-201ENST00000623928 207 ntBASIC7.91□□□□□ -1.14
HOXC9P31274 CASC22-202ENST00000628396 802 ntTSL 5 BASIC7.91□□□□□ -1.14
HOXC9P31274 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC7.91□□□□□ -1.14
HOXC9P31274 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
HOXC9P31274 BDNF-207ENST00000395986 3979 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
HOXC9P31274 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
HOXC9P31274 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC7.91□□□□□ -1.14
HOXC9P31274 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC7.91□□□□□ -1.14
HOXC9P31274 AL359922.2-201ENST00000581788 3017 ntBASIC7.91□□□□□ -1.14
HOXC9P31274 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
HOXC9P31274 OR5AN1-202ENST00000641850 8468 ntAPPRIS P1 BASIC7.9□□□□□ -1.14
HOXC9P31274 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC7.9□□□□□ -1.14
HOXC9P31274 SPIRE1-206ENST00000453447 2107 ntTSL 5 BASIC7.9□□□□□ -1.14
HOXC9P31274 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
HOXC9P31274 GPN1-203ENST00000424214 1725 ntTSL 2 BASIC7.9□□□□□ -1.14
HOXC9P31274 IGF1R-206ENST00000558762 11726 ntAPPRIS ALT1 TSL 1 (best) BASIC7.9□□□□□ -1.14
HOXC9P31274 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC7.9□□□□□ -1.14
HOXC9P31274 Z83820.1-201ENST00000456978 1499 ntBASIC7.9□□□□□ -1.14
HOXC9P31274 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
HOXC9P31274 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
HOXC9P31274 AL391422.1-201ENST00000402155 436 ntBASIC7.9□□□□□ -1.14
HOXC9P31274 AC016769.2-201ENST00000414815 475 ntBASIC7.9□□□□□ -1.14
HOXC9P31274 HMGB3P24-201ENST00000433260 622 ntBASIC7.9□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms