Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 DAZ4-203ENST00000382432 2405 ntTSL 5 BASIC8.6□□□□□ -1.03
COL9A1P20849 DAZ2-205ENST00000382433 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC8.6□□□□□ -1.03
COL9A1P20849 SLAMF7-207ENST00000458602 2449 ntTSL 2 BASIC8.6□□□□□ -1.03
COL9A1P20849 GLULP5-201ENST00000547831 1390 ntBASIC8.6□□□□□ -1.03
COL9A1P20849 AHNAK2-204ENST00000557457 3436 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
COL9A1P20849 HNRNPH2-201ENST00000316594 2223 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
COL9A1P20849 LARS-202ENST00000394434 4766 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
COL9A1P20849 POLR3A-201ENST00000372371 6640 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
COL9A1P20849 CLOCK-202ENST00000381322 4059 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
COL9A1P20849 GABRR1-207ENST00000621627 2857 ntTSL 5 BASIC8.59□□□□□ -1.03
COL9A1P20849 TP63-210ENST00000440651 2031 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
COL9A1P20849 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC8.59□□□□□ -1.03
COL9A1P20849 LINC00488-201ENST00000494582 2520 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
COL9A1P20849 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC8.59□□□□□ -1.03
COL9A1P20849 ANKRD46-206ENST00000520552 1686 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
COL9A1P20849 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
COL9A1P20849 ZNF443-201ENST00000301547 2663 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
COL9A1P20849 PCDHA10-203ENST00000562220 12358 ntBASIC8.59□□□□□ -1.03
COL9A1P20849 AC024560.2-201ENST00000507981 1497 ntBASIC8.59□□□□□ -1.03
COL9A1P20849 UGT2B7-203ENST00000508661 1633 ntTSL 2 BASIC8.59□□□□□ -1.03
COL9A1P20849 YAP1-203ENST00000524575 1638 ntTSL 2 BASIC8.59□□□□□ -1.03
COL9A1P20849 TMEM108-AS1-202ENST00000505721 2427 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
COL9A1P20849 ALOXE3-202ENST00000380149 3362 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
COL9A1P20849 ASPH-207ENST00000517847 1947 ntTSL 5 BASIC8.59□□□□□ -1.03
COL9A1P20849 AC067945.1-201ENST00000342609 618 ntBASIC8.59□□□□□ -1.03
COL9A1P20849 SGMS1-201ENST00000361543 1096 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
COL9A1P20849 RN7SKP173-201ENST00000362821 315 ntBASIC8.59□□□□□ -1.03
COL9A1P20849 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC8.59□□□□□ -1.03
COL9A1P20849 U8.14-201ENST00000390843 143 ntBASIC8.59□□□□□ -1.03
COL9A1P20849 AC245036.1-201ENST00000391727 309 ntBASIC8.59□□□□□ -1.03
COL9A1P20849 ATP5HP3-201ENST00000396994 486 ntBASIC8.59□□□□□ -1.03
COL9A1P20849 AL161909.1-201ENST00000397390 712 ntBASIC8.59□□□□□ -1.03
COL9A1P20849 AL359704.1-201ENST00000411586 781 ntBASIC8.59□□□□□ -1.03
COL9A1P20849 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC8.59□□□□□ -1.03
COL9A1P20849 AC009299.1-201ENST00000429684 717 ntBASIC8.59□□□□□ -1.03
COL9A1P20849 AL604028.2-201ENST00000437848 788 ntBASIC8.59□□□□□ -1.03
COL9A1P20849 AL592114.2-201ENST00000440142 532 ntBASIC8.59□□□□□ -1.03
COL9A1P20849 AL049733.1-201ENST00000440178 603 ntBASIC8.59□□□□□ -1.03
COL9A1P20849 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC8.59□□□□□ -1.03
COL9A1P20849 RANP1-206ENST00000455094 651 ntBASIC8.59□□□□□ -1.03
COL9A1P20849 AL162395.1-201ENST00000457882 422 ntBASIC8.59□□□□□ -1.03
COL9A1P20849 AC020636.1-201ENST00000469268 565 ntTSL 4 BASIC8.59□□□□□ -1.03
COL9A1P20849 RN7SL146P-201ENST00000472338 297 ntBASIC8.59□□□□□ -1.03
COL9A1P20849 AL928654.1-201ENST00000476081 354 ntBASIC8.59□□□□□ -1.03
COL9A1P20849 AC027575.1-201ENST00000481064 460 ntBASIC8.59□□□□□ -1.03
COL9A1P20849 RPSAP52-201ENST00000489520 1144 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
COL9A1P20849 AC079594.1-201ENST00000489757 331 ntBASIC8.59□□□□□ -1.03
COL9A1P20849 SMR3B-202ENST00000504825 489 ntAPPRIS P1 TSL 3 BASIC8.59□□□□□ -1.03
COL9A1P20849 AP003354.1-201ENST00000523791 533 ntTSL 2 BASIC8.59□□□□□ -1.03
COL9A1P20849 AL020996.2-202ENST00000527604 334 ntAPPRIS P1 TSL 5 BASIC8.59□□□□□ -1.03
COL9A1P20849 AL137224.1-201ENST00000527984 389 ntTSL 2 BASIC8.59□□□□□ -1.03
COL9A1P20849 OR4A7P-201ENST00000531463 910 ntBASIC8.59□□□□□ -1.03
COL9A1P20849 DPPA3P2-202ENST00000557188 1219 ntBASIC8.59□□□□□ -1.03
COL9A1P20849 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC8.59□□□□□ -1.03
COL9A1P20849 C16orf62-224ENST00000567245 573 ntTSL 5 BASIC8.59□□□□□ -1.03
COL9A1P20849 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC8.59□□□□□ -1.03
COL9A1P20849 SCIMP-204ENST00000574297 569 ntAPPRIS ALT2 TSL 3 BASIC8.59□□□□□ -1.03
COL9A1P20849 STX8-209ENST00000574431 731 ntTSL 3 BASIC8.59□□□□□ -1.03
COL9A1P20849 RPL17-208ENST00000580261 669 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
COL9A1P20849 HIGD1B-203ENST00000587021 457 ntTSL 2 BASIC8.59□□□□□ -1.03
COL9A1P20849 RPARP-AS1-204ENST00000594818 445 ntTSL 3 BASIC8.59□□□□□ -1.03
COL9A1P20849 ZNF415-218ENST00000599261 601 ntTSL 3 BASIC8.59□□□□□ -1.03
COL9A1P20849 DISC2.1-201ENST00000612827 205 ntBASIC8.59□□□□□ -1.03
COL9A1P20849 RFPL4AP6-201ENST00000616792 846 ntBASIC8.59□□□□□ -1.03
COL9A1P20849 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC8.59□□□□□ -1.03
COL9A1P20849 Metazoa_SRP.20-201ENST00000619896 275 ntBASIC8.59□□□□□ -1.03
COL9A1P20849 U4.1-201ENST00000620349 87 ntBASIC8.59□□□□□ -1.03
COL9A1P20849 ALG13-230ENST00000623189 458 ntTSL 3 BASIC8.59□□□□□ -1.03
COL9A1P20849 AC011815.3-201ENST00000624194 473 ntBASIC8.59□□□□□ -1.03
COL9A1P20849 CASC19-212ENST00000641153 1287 ntBASIC8.59□□□□□ -1.03
COL9A1P20849 CPNE4-210ENST00000512332 2230 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
COL9A1P20849 AMPD1-201ENST00000369538 2392 ntAPPRIS ALT2 TSL 2 BASIC8.59□□□□□ -1.03
COL9A1P20849 AC125232.1-201ENST00000452554 1408 ntBASIC8.59□□□□□ -1.03
COL9A1P20849 AC010928.1-201ENST00000592477 1447 ntBASIC8.59□□□□□ -1.03
COL9A1P20849 FP565260.7-201ENST00000623998 3634 ntAPPRIS P1 TSL 2 BASIC8.59□□□□□ -1.03
COL9A1P20849 AGPAT4-201ENST00000320285 7865 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
COL9A1P20849 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
COL9A1P20849 AC018765.1-201ENST00000623357 3446 ntBASIC8.59□□□□□ -1.03
COL9A1P20849 CAMK2G-204ENST00000351293 3563 ntAPPRIS P1 TSL 5 BASIC8.59□□□□□ -1.03
COL9A1P20849 AKR1D1-201ENST00000242375 2347 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
COL9A1P20849 ARID1A-202ENST00000374152 6460 ntAPPRIS ALT2 TSL 5 BASIC8.59□□□□□ -1.03
COL9A1P20849 LINC01268-201ENST00000434296 2755 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
COL9A1P20849 URM1-204ENST00000452446 2944 ntTSL 2 BASIC8.59□□□□□ -1.03
COL9A1P20849 SPTBN1-201ENST00000333896 9075 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
COL9A1P20849 AC011330.1-201ENST00000510070 3235 ntBASIC8.59□□□□□ -1.03
COL9A1P20849 AL022323.3-201ENST00000623888 5388 ntBASIC8.59□□□□□ -1.03
COL9A1P20849 MTND4P35-201ENST00000604257 1375 ntBASIC8.59□□□□□ -1.03
COL9A1P20849 EPYC-201ENST00000261172 1539 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
COL9A1P20849 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
COL9A1P20849 HCG18-240ENST00000454269 2430 ntTSL 2 BASIC8.59□□□□□ -1.03
COL9A1P20849 FAM13C-217ENST00000618804 3333 ntAPPRIS P3 TSL 1 (best) BASIC8.59□□□□□ -1.04
COL9A1P20849 UVSSA-202ENST00000389851 12605 ntAPPRIS P2 TSL 1 (best) BASIC8.59□□□□□ -1.04
COL9A1P20849 ZNF596-202ENST00000320552 2696 ntAPPRIS P1 TSL 4 BASIC8.58□□□□□ -1.04
COL9A1P20849 ATF3-206ENST00000366987 1917 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
COL9A1P20849 CALN1-202ENST00000395275 9459 ntAPPRIS ALT1 TSL 5 BASIC8.58□□□□□ -1.04
COL9A1P20849 MTCO1P25-201ENST00000414449 1799 ntBASIC8.58□□□□□ -1.04
COL9A1P20849 AC009044.1-201ENST00000624577 1798 ntBASIC8.58□□□□□ -1.04
COL9A1P20849 ZNF519P1-201ENST00000449011 1626 ntBASIC8.58□□□□□ -1.04
COL9A1P20849 PIGN-201ENST00000357637 4723 ntAPPRIS P1 TSL 5 BASIC8.58□□□□□ -1.04
COL9A1P20849 LYPD6B-202ENST00000409029 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC8.58□□□□□ -1.04
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms