RNA–Protein interactions for RNA: ENST00000494582.1

LINC00488-201, long intergenic non-protein coding RNA 488, humanhuman

TSL 1 (best) BASIC

Gene LINC00488, Length 2,520 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00488-201ENST00000494582 NISCHQ9Y2I1 1504 aa18.72■□□□□ 0.59
LINC00488-201ENST00000494582 HRCP23327 699 aa17.39■□□□□ 0.37
LINC00488-201ENST00000494582 PPARGC1BQ86YN6 1023 aaKnown RBP17.13■□□□□ 0.33
LINC00488-201ENST00000494582 PCGF6Q9BYE7 350 aa16.95■□□□□ 0.3
LINC00488-201ENST00000494582 MYO15BQ96JP2 1530 aa16.89■□□□□ 0.29
LINC00488-201ENST00000494582 PELP1Q8IZL8 1130 aaKnown RBP16.88■□□□□ 0.29
LINC00488-201ENST00000494582 SHROOM4Q9ULL8 1493 aa16.83■□□□□ 0.28
LINC00488-201ENST00000494582 SUPT5HO00267 1087 aaKnown RBP16.79■□□□□ 0.28
LINC00488-201ENST00000494582 CHIC1Q5VXU3 224 aa16.62■□□□□ 0.25
LINC00488-201ENST00000494582 SCAF1Q9H7N4 1312 aaKnown RBP16.62■□□□□ 0.25
LINC00488-201ENST00000494582 DCAF1Q9Y4B6 1507 aa16.42■□□□□ 0.22
LINC00488-201ENST00000494582 LOC105371045A0A1W2PR82 267 aa16.3■□□□□ 0.2
LINC00488-201ENST00000494582 TRIM26Q12899 539 aaPredicted RBP16.28■□□□□ 0.2
LINC00488-201ENST00000494582 CCDC180Q9P1Z9 1646 aa16.26■□□□□ 0.19
LINC00488-201ENST00000494582 MYT1Q01538 1121 aa16.2■□□□□ 0.18
LINC00488-201ENST00000494582 ZEB1P37275 1124 aaPredicted RBP16.12■□□□□ 0.17
LINC00488-201ENST00000494582 NEUROD1Q13562 356 aa16.08■□□□□ 0.17
LINC00488-201ENST00000494582 ACIN1Q9UKV3 1341 aaKnown RBP16.07■□□□□ 0.16
LINC00488-201ENST00000494582 ZCCHC6Q5VYS8 1495 aaKnown RBP15.98■□□□□ 0.15
LINC00488-201ENST00000494582 GTF3C3Q9Y5Q9 886 aa15.97■□□□□ 0.15
LINC00488-201ENST00000494582 CENPBP07199 599 aaPredicted RBP15.71■□□□□ 0.11
LINC00488-201ENST00000494582 DIEXFQ68CQ4 756 aaKnown RBP15.67■□□□□ 0.1
LINC00488-201ENST00000494582 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.65■□□□□ 0.1
LINC00488-201ENST00000494582 DCAF8L2P0C7V8 631 aa15.56■□□□□ 0.08
LINC00488-201ENST00000494582 FAM9AQ8IZU1 332 aaPredicted RBP15.55■□□□□ 0.08
LINC00488-201ENST00000494582 CCER1Q8TC90 406 aaPredicted RBP15.54■□□□□ 0.08
LINC00488-201ENST00000494582 EHMT2Q96KQ7 1210 aa15.54■□□□□ 0.08
LINC00488-201ENST00000494582 YTHDC1Q96MU7 727 aaKnown RBP15.48■□□□□ 0.07
LINC00488-201ENST00000494582 TRIM41Q8WV44 630 aa15.47■□□□□ 0.07
LINC00488-201ENST00000494582 BCL11AQ9H165 835 aa15.38■□□□□ 0.05
LINC00488-201ENST00000494582 MIER1Q8N108 512 aa15.32■□□□□ 0.04
LINC00488-201ENST00000494582 ZNF316A6NFI3 1004 aaPredicted RBP15.31■□□□□ 0.04
LINC00488-201ENST00000494582 TTBK1Q5TCY1 1321 aaPredicted RBP15.24■□□□□ 0.03
LINC00488-201ENST00000494582 ANP32EQ9BTT0 268 aa15.23■□□□□ 0.03
LINC00488-201ENST00000494582 ABCC9O60706 1549 aa15.23■□□□□ 0.03
LINC00488-201ENST00000494582 RB1CC1Q8TDY2 1594 aa15.2■□□□□ 0.02
LINC00488-201ENST00000494582 RSF1Q96T23 1441 aaPredicted RBP15.19■□□□□ 0.02
LINC00488-201ENST00000494582 TSHZ2Q9NRE2 1034 aa15.17■□□□□ 0.02
LINC00488-201ENST00000494582 SUPT16HQ9Y5B9 1047 aaKnown RBP15.16■□□□□ 0.02
LINC00488-201ENST00000494582 CSRNP3Q8WYN3 585 aa15.15■□□□□ 0.02
LINC00488-201ENST00000494582 WRNQ14191 1432 aaPredicted RBP eCLIP15□□□□□ -0.01
LINC00488-201ENST00000494582 CLSPNQ9HAW4 1339 aa14.94□□□□□ -0.02
LINC00488-201ENST00000494582 CEP162Q5TB80 1403 aa14.89□□□□□ -0.03
LINC00488-201ENST00000494582 PRKCSHP14314 528 aaPredicted RBP14.89□□□□□ -0.03
LINC00488-201ENST00000494582 HNRNPUL2Q1KMD3 747 aaKnown RBP14.85□□□□□ -0.03
LINC00488-201ENST00000494582 SCRIBQ14160 1630 aa14.83□□□□□ -0.03
LINC00488-201ENST00000494582 BCANQ96GW7 911 aa14.83□□□□□ -0.04
LINC00488-201ENST00000494582 KCNH8Q96L42 1107 aa14.76□□□□□ -0.05
LINC00488-201ENST00000494582 RBM19Q9Y4C8 960 aaKnown RBP14.76□□□□□ -0.05
LINC00488-201ENST00000494582 EIF4G1Q04637 1599 aaKnown RBP14.75□□□□□ -0.05
LINC00488-201ENST00000494582 TNIKQ9UKE5 1360 aa14.74□□□□□ -0.05
LINC00488-201ENST00000494582 MSH5O43196 834 aa14.73□□□□□ -0.05
LINC00488-201ENST00000494582 CECR2Q9BXF3 1484 aa14.73□□□□□ -0.05
LINC00488-201ENST00000494582 CCDC88BA6NC98 1476 aa14.72□□□□□ -0.05
LINC00488-201ENST00000494582 ABCC8Q09428 1581 aa14.72□□□□□ -0.05
LINC00488-201ENST00000494582 MROH2BQ7Z745 1585 aa14.71□□□□□ -0.06
LINC00488-201ENST00000494582 SOGA1O94964 1423 aa14.69□□□□□ -0.06
LINC00488-201ENST00000494582 FKBP8Q14318 412 aa14.69□□□□□ -0.06
LINC00488-201ENST00000494582 WIZO95785 1651 aa14.68□□□□□ -0.06
LINC00488-201ENST00000494582 RUSC2Q8N2Y8 1516 aa14.63□□□□□ -0.07
LINC00488-201ENST00000494582 UBTFP17480 764 aaKnown RBP14.63□□□□□ -0.07
LINC00488-201ENST00000494582 ITGAEP38570 1179 aa14.62□□□□□ -0.07
LINC00488-201ENST00000494582 DHX57Q6P158 1386 aaKnown RBP14.59□□□□□ -0.07
LINC00488-201ENST00000494582 BAZ1AQ9NRL2 1556 aaPredicted RBP14.52□□□□□ -0.09
LINC00488-201ENST00000494582 GOLGA3Q08378 1498 aa14.5□□□□□ -0.09
LINC00488-201ENST00000494582 CLIP1P30622 1438 aa14.47□□□□□ -0.09
LINC00488-201ENST00000494582 NACADO15069 1562 aa14.46□□□□□ -0.09
LINC00488-201ENST00000494582 FANCIQ9NVI1 1328 aa14.46□□□□□ -0.1
LINC00488-201ENST00000494582 ANO8Q9HCE9 1232 aaPredicted RBP14.45□□□□□ -0.1
LINC00488-201ENST00000494582 EEA1Q15075 1411 aa14.44□□□□□ -0.1
LINC00488-201ENST00000494582 DEKP35659 375 aaKnown RBP14.43□□□□□ -0.1
LINC00488-201ENST00000494582 VPS8Q8N3P4 1428 aa14.43□□□□□ -0.1
LINC00488-201ENST00000494582 NEFLP07196 543 aa14.43□□□□□ -0.1
LINC00488-201ENST00000494582 TRIM52Q96A61 297 aa14.42□□□□□ -0.1
LINC00488-201ENST00000494582 DDX10Q13206 875 aaKnown RBP14.38□□□□□ -0.11
LINC00488-201ENST00000494582 ERICH6Q7L0X2 663 aa14.37□□□□□ -0.11
LINC00488-201ENST00000494582 APLP2Q06481 763 aa14.34□□□□□ -0.11
LINC00488-201ENST00000494582 RANGAP1P46060 587 aaPredicted RBP14.34□□□□□ -0.11
LINC00488-201ENST00000494582 SMARCA2P51531 1590 aa14.33□□□□□ -0.12
LINC00488-201ENST00000494582 CEP164Q9UPV0 1460 aa14.32□□□□□ -0.12
LINC00488-201ENST00000494582 IRX6P78412 446 aaPredicted RBP14.32□□□□□ -0.12
LINC00488-201ENST00000494582 KIF21BO75037 1637 aa14.31□□□□□ -0.12
LINC00488-201ENST00000494582 TOP2AP11388 1531 aaKnown RBP14.31□□□□□ -0.12
LINC00488-201ENST00000494582 PPP1R15AO75807 674 aaPredicted RBP14.31□□□□□ -0.12
LINC00488-201ENST00000494582 SALL2Q9Y467 1007 aaPredicted RBP14.31□□□□□ -0.12
LINC00488-201ENST00000494582 KANK4Q5T7N3 995 aaPredicted RBP14.29□□□□□ -0.12
LINC00488-201ENST00000494582 CDK11AQ9UQ88 783 aaPredicted RBP14.28□□□□□ -0.12
LINC00488-201ENST00000494582 MAPKBP1O60336 1514 aa14.26□□□□□ -0.13
LINC00488-201ENST00000494582 MYT1LQ9UL68 1186 aa14.26□□□□□ -0.13
LINC00488-201ENST00000494582 RAPGEF2Q9Y4G8 1499 aa14.26□□□□□ -0.13
LINC00488-201ENST00000494582 HIRIP3Q9BW71 556 aaPredicted RBP14.25□□□□□ -0.13
LINC00488-201ENST00000494582 WDR97A6NE52 1622 aa14.25□□□□□ -0.13
LINC00488-201ENST00000494582 CUX2O14529 1486 aa14.24□□□□□ -0.13
LINC00488-201ENST00000494582 NBR1Q14596 966 aa14.23□□□□□ -0.13
LINC00488-201ENST00000494582 CCER2I3L3R5 266 aa14.22□□□□□ -0.13
LINC00488-201ENST00000494582 CCDC136Q96JN2 1154 aa14.22□□□□□ -0.13
LINC00488-201ENST00000494582 PAK3O75914 559 aaPredicted RBP14.22□□□□□ -0.13
LINC00488-201ENST00000494582 RRBP1Q9P2E9 1410 aaKnown RBP14.21□□□□□ -0.13
LINC00488-201ENST00000494582 BAZ1BQ9UIG0 1483 aaKnown RBP14.19□□□□□ -0.14
LINC00488-201ENST00000494582 SIN3AQ96ST3 1273 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms