Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC5.3□□□□□ -1.56
HOXA1P49639 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
HOXA1P49639 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC5.3□□□□□ -1.56
HOXA1P49639 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC5.3□□□□□ -1.56
HOXA1P49639 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.3□□□□□ -1.56
HOXA1P49639 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC5.29□□□□□ -1.56
HOXA1P49639 CASC19-248ENST00000641674 1356 ntBASIC5.29□□□□□ -1.56
HOXA1P49639 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
HOXA1P49639 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
HOXA1P49639 BCORP1-203ENST00000513194 5093 ntBASIC5.29□□□□□ -1.56
HOXA1P49639 CSTF3-201ENST00000323959 2797 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
HOXA1P49639 PSG2-202ENST00000406487 1538 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
HOXA1P49639 NOSTRIN-209ENST00000458381 2535 ntTSL 2 BASIC5.29□□□□□ -1.56
HOXA1P49639 MED31-201ENST00000225728 1654 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
HOXA1P49639 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
HOXA1P49639 LINC01990-201ENST00000609293 1487 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
HOXA1P49639 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
HOXA1P49639 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
HOXA1P49639 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC5.29□□□□□ -1.56
HOXA1P49639 MIR7-1-201ENST00000384871 110 ntBASIC5.29□□□□□ -1.56
HOXA1P49639 AL121835.1-201ENST00000404250 354 ntBASIC5.29□□□□□ -1.56
HOXA1P49639 AL358178.1-201ENST00000407698 397 ntBASIC5.29□□□□□ -1.56
HOXA1P49639 UBE2V1P15-201ENST00000407776 448 ntBASIC5.29□□□□□ -1.56
HOXA1P49639 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC5.29□□□□□ -1.56
HOXA1P49639 ZRANB2-AS1-201ENST00000426999 607 ntTSL 3 BASIC5.29□□□□□ -1.56
HOXA1P49639 AC068888.2-201ENST00000435621 536 ntTSL 3 BASIC5.29□□□□□ -1.56
HOXA1P49639 OSTCP2-201ENST00000437956 444 ntBASIC5.29□□□□□ -1.56
HOXA1P49639 AL663074.2-201ENST00000440621 479 ntBASIC5.29□□□□□ -1.56
HOXA1P49639 SNRPBP1-201ENST00000443634 282 ntBASIC5.29□□□□□ -1.56
HOXA1P49639 ZNF197-AS1-201ENST00000447691 623 ntTSL 5 BASIC5.29□□□□□ -1.56
HOXA1P49639 MORF4L1P4-201ENST00000450245 976 ntBASIC5.29□□□□□ -1.56
HOXA1P49639 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC5.29□□□□□ -1.56
HOXA1P49639 SRP68P2-201ENST00000456184 254 ntBASIC5.29□□□□□ -1.56
HOXA1P49639 MED28P7-201ENST00000456611 530 ntBASIC5.29□□□□□ -1.56
HOXA1P49639 RPL31P53-201ENST00000457065 348 ntBASIC5.29□□□□□ -1.56
HOXA1P49639 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC5.29□□□□□ -1.56
HOXA1P49639 RPL7AP30-201ENST00000482859 796 ntBASIC5.29□□□□□ -1.56
HOXA1P49639 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC5.29□□□□□ -1.56
HOXA1P49639 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC5.29□□□□□ -1.56
HOXA1P49639 AC091849.1-201ENST00000509920 121 ntBASIC5.29□□□□□ -1.56
HOXA1P49639 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC5.29□□□□□ -1.56
HOXA1P49639 RN7SKP242-201ENST00000515967 289 ntBASIC5.29□□□□□ -1.56
HOXA1P49639 AC105202.1-203ENST00000518024 875 ntTSL 3 BASIC5.29□□□□□ -1.56
HOXA1P49639 IGKV2D-38-201ENST00000518423 240 ntBASIC5.29□□□□□ -1.56
HOXA1P49639 CASC11-203ENST00000519071 791 ntTSL 3 BASIC5.29□□□□□ -1.56
HOXA1P49639 AC022973.3-201ENST00000521014 467 ntTSL 5 BASIC5.29□□□□□ -1.56
HOXA1P49639 GRPEL2-AS1-201ENST00000521295 401 ntTSL 3 BASIC5.29□□□□□ -1.56
HOXA1P49639 AP001646.2-201ENST00000528645 1156 ntBASIC5.29□□□□□ -1.56
HOXA1P49639 OR4C1P-201ENST00000530880 937 ntBASIC5.29□□□□□ -1.56
HOXA1P49639 AC092451.2-201ENST00000538746 658 ntBASIC5.29□□□□□ -1.56
HOXA1P49639 LINC02413-201ENST00000549914 723 ntTSL 5 BASIC5.29□□□□□ -1.56
HOXA1P49639 AC011603.2-202ENST00000552893 504 ntTSL 3 BASIC5.29□□□□□ -1.56
HOXA1P49639 AC021979.2-201ENST00000553644 209 ntTSL 5 BASIC5.29□□□□□ -1.56
HOXA1P49639 AL359219.2-201ENST00000555184 348 ntBASIC5.29□□□□□ -1.56
HOXA1P49639 FRG2IP-201ENST00000563581 781 ntBASIC5.29□□□□□ -1.56
HOXA1P49639 MRPL45P2-203ENST00000573318 473 ntBASIC5.29□□□□□ -1.56
HOXA1P49639 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC5.29□□□□□ -1.56
HOXA1P49639 AL049840.5-201ENST00000602827 552 ntBASIC5.29□□□□□ -1.56
HOXA1P49639 AL713998.2-201ENST00000604538 1198 ntBASIC5.29□□□□□ -1.56
HOXA1P49639 HOXA11-AS1_3.1-201ENST00000613383 98 ntBASIC5.29□□□□□ -1.56
HOXA1P49639 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC5.29□□□□□ -1.56
HOXA1P49639 MRPL57P1-201ENST00000621486 265 ntBASIC5.29□□□□□ -1.56
HOXA1P49639 AL138693.1-201ENST00000622219 129 ntBASIC5.29□□□□□ -1.56
HOXA1P49639 AC091059.2-201ENST00000623355 614 ntBASIC5.29□□□□□ -1.56
HOXA1P49639 RACK1-235ENST00000626067 564 ntTSL 2 BASIC5.29□□□□□ -1.56
HOXA1P49639 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC5.29□□□□□ -1.56
HOXA1P49639 AL132640.3-201ENST00000630473 177 ntBASIC5.29□□□□□ -1.56
HOXA1P49639 AC024475.3-203ENST00000634971 854 ntTSL 5 BASIC5.29□□□□□ -1.56
HOXA1P49639 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC5.29□□□□□ -1.56
HOXA1P49639 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
HOXA1P49639 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
HOXA1P49639 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
HOXA1P49639 MAPK10-328ENST00000641553 4009 ntBASIC5.29□□□□□ -1.56
HOXA1P49639 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.29□□□□□ -1.56
HOXA1P49639 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
HOXA1P49639 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.29□□□□□ -1.56
HOXA1P49639 AL353796.1-201ENST00000561542 3241 ntBASIC5.29□□□□□ -1.56
HOXA1P49639 FGD6-205ENST00000549499 3757 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
HOXA1P49639 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.29□□□□□ -1.56
HOXA1P49639 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HOXA1P49639 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
HOXA1P49639 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
HOXA1P49639 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HOXA1P49639 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.28□□□□□ -1.56
HOXA1P49639 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
HOXA1P49639 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
HOXA1P49639 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC5.28□□□□□ -1.56
HOXA1P49639 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
HOXA1P49639 NAPG-201ENST00000322897 3548 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
HOXA1P49639 TLR1-201ENST00000308979 2849 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
HOXA1P49639 RNU6-618P-201ENST00000363518 112 ntBASIC5.28□□□□□ -1.56
HOXA1P49639 RNU6-670P-201ENST00000364312 104 ntBASIC5.28□□□□□ -1.56
HOXA1P49639 RN7SKP69-201ENST00000365390 305 ntBASIC5.28□□□□□ -1.56
HOXA1P49639 HHLA3-203ENST00000370940 775 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
HOXA1P49639 PDCL3P5-201ENST00000398028 722 ntBASIC5.28□□□□□ -1.56
HOXA1P49639 AC226101.1-201ENST00000401483 387 ntBASIC5.28□□□□□ -1.56
HOXA1P49639 RN7SKP39-201ENST00000410773 322 ntBASIC5.28□□□□□ -1.56
HOXA1P49639 KCND3-AS1-201ENST00000419258 383 ntTSL 3 BASIC5.28□□□□□ -1.56
HOXA1P49639 AC002127.1-201ENST00000421305 225 ntBASIC5.28□□□□□ -1.56
HOXA1P49639 ETDB-201ENST00000423661 681 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms