Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 BCL2L13-203ENST00000355028 4458 ntTSL 1 (best) BASIC2.56□□□□□ -2
USH2AO75445 GIGYF2-204ENST00000409480 5976 ntTSL 5 BASIC2.56□□□□□ -2
USH2AO75445 AC012313.8-201ENST00000595059 5402 ntBASIC2.56□□□□□ -2
USH2AO75445 TRPM3-214ENST00000396292 4740 ntAPPRIS P4 TSL 5 BASIC2.56□□□□□ -2
USH2AO75445 COL25A1-208ENST00000610288 4799 ntTSL 5 BASIC2.56□□□□□ -2
USH2AO75445 SPATA31D1-201ENST00000344803 4833 ntAPPRIS P1 TSL 2 BASIC2.56□□□□□ -2
USH2AO75445 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
USH2AO75445 GRIA4-206ENST00000525187 2822 ntTSL 1 (best) BASIC2.56□□□□□ -2
USH2AO75445 CASC19-260ENST00000641828 2001 ntBASIC2.56□□□□□ -2
USH2AO75445 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC2.55□□□□□ -2
USH2AO75445 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC2.55□□□□□ -2
USH2AO75445 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC2.55□□□□□ -2
USH2AO75445 MED28P3-201ENST00000444288 531 ntBASIC2.55□□□□□ -2
USH2AO75445 snoU13.20-201ENST00000459180 104 ntBASIC2.55□□□□□ -2
USH2AO75445 AC092824.1-201ENST00000483524 576 ntBASIC2.55□□□□□ -2
USH2AO75445 AC109462.1-201ENST00000491087 368 ntBASIC2.55□□□□□ -2
USH2AO75445 AC083829.1-201ENST00000503756 657 ntBASIC2.55□□□□□ -2
USH2AO75445 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC2.55□□□□□ -2
USH2AO75445 CASC22-201ENST00000569713 386 ntTSL 5 BASIC2.55□□□□□ -2
USH2AO75445 AP002026.1-201ENST00000500358 4825 ntTSL 1 (best) BASIC2.55□□□□□ -2
USH2AO75445 AL512310.3-201ENST00000547023 1335 ntBASIC2.55□□□□□ -2
USH2AO75445 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC2.55□□□□□ -2
USH2AO75445 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC2.55□□□□□ -2
USH2AO75445 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC2.55□□□□□ -2
USH2AO75445 DMBT1-202ENST00000338354 7686 ntAPPRIS ALT2 TSL 1 (best) BASIC2.55□□□□□ -2
USH2AO75445 DMBT1-204ENST00000368909 7686 ntAPPRIS P4 TSL 5 BASIC2.55□□□□□ -2
USH2AO75445 DMBT1-207ENST00000619379 7686 ntAPPRIS ALT2 TSL 5 BASIC2.55□□□□□ -2
USH2AO75445 AC023824.7-201ENST00000623041 5731 ntBASIC2.55□□□□□ -2
USH2AO75445 OR55B1P-203ENST00000641518 2602 ntBASIC2.55□□□□□ -2
USH2AO75445 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC2.55□□□□□ -2
USH2AO75445 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC2.55□□□□□ -2
USH2AO75445 MTMR7-201ENST00000180173 3850 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
USH2AO75445 PKD1L3-201ENST00000620267 5199 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
USH2AO75445 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
USH2AO75445 INTS6P1-201ENST00000504674 2530 ntBASIC2.55□□□□□ -2
USH2AO75445 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
USH2AO75445 GNAS-202ENST00000306090 477 ntTSL 5 BASIC2.55□□□□□ -2
USH2AO75445 RNU1-46P-201ENST00000384425 164 ntBASIC2.55□□□□□ -2
USH2AO75445 CYCSP10-201ENST00000417973 294 ntBASIC2.55□□□□□ -2
USH2AO75445 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC2.55□□□□□ -2
USH2AO75445 AL359073.1-201ENST00000448036 403 ntBASIC2.55□□□□□ -2
USH2AO75445 SNORA58-201ENST00000505219 137 ntBASIC2.55□□□□□ -2
USH2AO75445 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC2.55□□□□□ -2
USH2AO75445 AC021006.3-201ENST00000530771 192 ntBASIC2.55□□□□□ -2
USH2AO75445 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC2.55□□□□□ -2
USH2AO75445 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC2.55□□□□□ -2
USH2AO75445 AC093227.2-201ENST00000589357 285 ntBASIC2.55□□□□□ -2
USH2AO75445 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC2.55□□□□□ -2
USH2AO75445 AC245389.1-201ENST00000605141 529 ntBASIC2.55□□□□□ -2
USH2AO75445 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC2.55□□□□□ -2
USH2AO75445 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC2.55□□□□□ -2
USH2AO75445 ZNF556-201ENST00000307635 6574 ntAPPRIS P3 TSL 2 BASIC2.55□□□□□ -2
USH2AO75445 AC110716.2-201ENST00000563865 3945 ntBASIC2.55□□□□□ -2
USH2AO75445 KANSL3-206ENST00000431828 5153 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
USH2AO75445 HMGCR-209ENST00000511206 3395 ntAPPRIS P1 TSL 2 BASIC2.55□□□□□ -2
USH2AO75445 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC2.55□□□□□ -2
USH2AO75445 AP001527.1-201ENST00000566440 1957 ntBASIC2.55□□□□□ -2
USH2AO75445 SH3BP2-203ENST00000442312 9211 ntAPPRIS ALT2 TSL 2 BASIC2.55□□□□□ -2
USH2AO75445 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC2.55□□□□□ -2
USH2AO75445 NDST1-201ENST00000261797 8030 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
USH2AO75445 EPN1-202ENST00000270460 16219 ntAPPRIS P1 TSL 2 BASIC2.55□□□□□ -2
USH2AO75445 NUMA1-202ENST00000358965 7227 ntAPPRIS ALT2 TSL 2 BASIC2.55□□□□□ -2
USH2AO75445 CTDSPL2-201ENST00000260327 6828 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
USH2AO75445 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC2.55□□□□□ -2
USH2AO75445 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC2.55□□□□□ -2
USH2AO75445 AL050331.2-201ENST00000457319 421 ntTSL 3 BASIC2.55□□□□□ -2
USH2AO75445 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC2.55□□□□□ -2
USH2AO75445 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC2.55□□□□□ -2
USH2AO75445 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC2.55□□□□□ -2
USH2AO75445 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC2.55□□□□□ -2
USH2AO75445 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC2.55□□□□□ -2
USH2AO75445 MIR4284-201ENST00000578924 81 ntBASIC2.55□□□□□ -2
USH2AO75445 MIR4444-1-201ENST00000581696 74 ntBASIC2.55□□□□□ -2
USH2AO75445 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC2.55□□□□□ -2
USH2AO75445 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC2.55□□□□□ -2
USH2AO75445 MIR4444-2-201ENST00000584390 74 ntBASIC2.55□□□□□ -2
USH2AO75445 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC2.55□□□□□ -2
USH2AO75445 AF131215.7-201ENST00000602443 707 ntBASIC2.55□□□□□ -2
USH2AO75445 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC2.55□□□□□ -2
USH2AO75445 COL4A6-202ENST00000372216 6570 ntTSL 1 (best) BASIC2.55□□□□□ -2
USH2AO75445 PCF11-201ENST00000298281 7677 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
USH2AO75445 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC2.55□□□□□ -2
USH2AO75445 ZNF667-202ENST00000504904 4390 ntAPPRIS P1 TSL 2 BASIC2.55□□□□□ -2
USH2AO75445 CLCA3P-203ENST00000490028 2781 ntBASIC2.55□□□□□ -2
USH2AO75445 SREK1-202ENST00000334121 6781 ntAPPRIS P1 TSL 2 BASIC2.55□□□□□ -2
USH2AO75445 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
USH2AO75445 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
USH2AO75445 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC2.55□□□□□ -2
USH2AO75445 RNU6ATAC21P-201ENST00000408656 126 ntBASIC2.55□□□□□ -2
USH2AO75445 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
USH2AO75445 CR383656.1-201ENST00000484916 377 ntBASIC2.55□□□□□ -2
USH2AO75445 AC114728.1-201ENST00000488289 483 ntBASIC2.55□□□□□ -2
USH2AO75445 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC2.55□□□□□ -2
USH2AO75445 RNU6-941P-201ENST00000516346 108 ntBASIC2.55□□□□□ -2
USH2AO75445 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC2.55□□□□□ -2
USH2AO75445 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC2.55□□□□□ -2
USH2AO75445 UBE2FP2-201ENST00000566646 462 ntBASIC2.55□□□□□ -2
USH2AO75445 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC2.55□□□□□ -2
USH2AO75445 RP1-201ENST00000220676 7100 ntTSL 1 (best) BASIC2.55□□□□□ -2
USH2AO75445 ST18-201ENST00000276480 6187 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms