Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
PCDHGA3Q9Y5H0 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
PCDHGA3Q9Y5H0 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
PCDHGA3Q9Y5H0 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHGA3Q9Y5H0 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHGA3Q9Y5H0 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC19.18■□□□□ 0.66
PCDHGA3Q9Y5H0 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC19.18■□□□□ 0.66
PCDHGA3Q9Y5H0 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC19.18■□□□□ 0.66
PCDHGA3Q9Y5H0 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC19.18■□□□□ 0.66
PCDHGA3Q9Y5H0 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC19.18■□□□□ 0.66
PCDHGA3Q9Y5H0 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC19.18■□□□□ 0.66
PCDHGA3Q9Y5H0 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC19.18■□□□□ 0.66
PCDHGA3Q9Y5H0 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
PCDHGA3Q9Y5H0 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHGA3Q9Y5H0 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHGA3Q9Y5H0 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHGA3Q9Y5H0 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHGA3Q9Y5H0 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.18■□□□□ 0.66
PCDHGA3Q9Y5H0 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
PCDHGA3Q9Y5H0 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHGA3Q9Y5H0 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHGA3Q9Y5H0 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHGA3Q9Y5H0 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.17■□□□□ 0.66
PCDHGA3Q9Y5H0 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.17■□□□□ 0.66
PCDHGA3Q9Y5H0 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHGA3Q9Y5H0 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHGA3Q9Y5H0 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHGA3Q9Y5H0 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHGA3Q9Y5H0 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
PCDHGA3Q9Y5H0 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
PCDHGA3Q9Y5H0 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHGA3Q9Y5H0 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHGA3Q9Y5H0 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHGA3Q9Y5H0 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
PCDHGA3Q9Y5H0 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHGA3Q9Y5H0 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC19.17■□□□□ 0.66
PCDHGA3Q9Y5H0 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC19.17■□□□□ 0.66
PCDHGA3Q9Y5H0 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC19.17■□□□□ 0.66
PCDHGA3Q9Y5H0 HES2-206ENST00000489730 730 ntTSL 2 BASIC19.17■□□□□ 0.66
PCDHGA3Q9Y5H0 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHGA3Q9Y5H0 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC19.17■□□□□ 0.66
PCDHGA3Q9Y5H0 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
PCDHGA3Q9Y5H0 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC19.17■□□□□ 0.66
PCDHGA3Q9Y5H0 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHGA3Q9Y5H0 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.17■□□□□ 0.66
PCDHGA3Q9Y5H0 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
PCDHGA3Q9Y5H0 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHGA3Q9Y5H0 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
PCDHGA3Q9Y5H0 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHGA3Q9Y5H0 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHGA3Q9Y5H0 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHGA3Q9Y5H0 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHGA3Q9Y5H0 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHGA3Q9Y5H0 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHGA3Q9Y5H0 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHGA3Q9Y5H0 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
PCDHGA3Q9Y5H0 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC19.16■□□□□ 0.66
PCDHGA3Q9Y5H0 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHGA3Q9Y5H0 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHGA3Q9Y5H0 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHGA3Q9Y5H0 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
PCDHGA3Q9Y5H0 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
PCDHGA3Q9Y5H0 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC19.16■□□□□ 0.66
PCDHGA3Q9Y5H0 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC19.16■□□□□ 0.66
PCDHGA3Q9Y5H0 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHGA3Q9Y5H0 SNX21-213ENST00000614929 587 ntTSL 5 BASIC19.16■□□□□ 0.66
PCDHGA3Q9Y5H0 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC19.16■□□□□ 0.66
PCDHGA3Q9Y5H0 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHGA3Q9Y5H0 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHGA3Q9Y5H0 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.16■□□□□ 0.66
PCDHGA3Q9Y5H0 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHGA3Q9Y5H0 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHGA3Q9Y5H0 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
PCDHGA3Q9Y5H0 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
PCDHGA3Q9Y5H0 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.16■□□□□ 0.66
PCDHGA3Q9Y5H0 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.16■□□□□ 0.66
PCDHGA3Q9Y5H0 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHGA3Q9Y5H0 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHGA3Q9Y5H0 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
PCDHGA3Q9Y5H0 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
PCDHGA3Q9Y5H0 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.15■□□□□ 0.66
PCDHGA3Q9Y5H0 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.15■□□□□ 0.66
PCDHGA3Q9Y5H0 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
PCDHGA3Q9Y5H0 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHGA3Q9Y5H0 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHGA3Q9Y5H0 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
PCDHGA3Q9Y5H0 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHGA3Q9Y5H0 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHGA3Q9Y5H0 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC19.15■□□□□ 0.66
PCDHGA3Q9Y5H0 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC19.15■□□□□ 0.66
PCDHGA3Q9Y5H0 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC19.15■□□□□ 0.66
PCDHGA3Q9Y5H0 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC19.15■□□□□ 0.66
PCDHGA3Q9Y5H0 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHGA3Q9Y5H0 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHGA3Q9Y5H0 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHGA3Q9Y5H0 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHGA3Q9Y5H0 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC19.15■□□□□ 0.66
PCDHGA3Q9Y5H0 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHGA3Q9Y5H0 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHGA3Q9Y5H0 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms