Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC37.68■■■■□ 3.62
SHROOM4Q9ULL8 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC37.68■■■■□ 3.62
SHROOM4Q9ULL8 AL450487.1-201ENST00000426799 995 ntBASIC37.68■■■■□ 3.62
SHROOM4Q9ULL8 ATP5G1P1-201ENST00000448724 379 ntBASIC37.68■■■■□ 3.62
SHROOM4Q9ULL8 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC37.68■■■■□ 3.62
SHROOM4Q9ULL8 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC37.68■■■■□ 3.62
SHROOM4Q9ULL8 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC37.68■■■■□ 3.62
SHROOM4Q9ULL8 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC37.67■■■■□ 3.62
SHROOM4Q9ULL8 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC37.66■■■■□ 3.62
SHROOM4Q9ULL8 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC37.66■■■■□ 3.62
SHROOM4Q9ULL8 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC37.66■■■■□ 3.62
SHROOM4Q9ULL8 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC37.66■■■■□ 3.62
SHROOM4Q9ULL8 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC37.66■■■■□ 3.62
SHROOM4Q9ULL8 PRR31-201ENST00000371629 978 ntTSL 2 BASIC37.66■■■■□ 3.62
SHROOM4Q9ULL8 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC37.66■■■■□ 3.62
SHROOM4Q9ULL8 BID-203ENST00000399765 1879 ntTSL 2 BASIC37.66■■■■□ 3.62
SHROOM4Q9ULL8 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC37.66■■■■□ 3.62
SHROOM4Q9ULL8 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC37.66■■■■□ 3.62
SHROOM4Q9ULL8 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC37.66■■■■□ 3.62
SHROOM4Q9ULL8 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC37.66■■■■□ 3.62
SHROOM4Q9ULL8 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC37.66■■■■□ 3.62
SHROOM4Q9ULL8 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC37.66■■■■□ 3.62
SHROOM4Q9ULL8 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC37.65■■■■□ 3.62
SHROOM4Q9ULL8 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC37.65■■■■□ 3.62
SHROOM4Q9ULL8 DPP3P2-201ENST00000416030 1696 ntBASIC37.65■■■■□ 3.62
SHROOM4Q9ULL8 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC37.65■■■■□ 3.62
SHROOM4Q9ULL8 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC37.65■■■■□ 3.62
SHROOM4Q9ULL8 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC37.65■■■■□ 3.62
SHROOM4Q9ULL8 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC37.64■■■■□ 3.62
SHROOM4Q9ULL8 BX664615.1-201ENST00000443558 458 ntBASIC37.64■■■■□ 3.62
SHROOM4Q9ULL8 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC37.64■■■■□ 3.62
SHROOM4Q9ULL8 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC37.64■■■■□ 3.62
SHROOM4Q9ULL8 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC37.64■■■■□ 3.62
SHROOM4Q9ULL8 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC37.64■■■■□ 3.62
SHROOM4Q9ULL8 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC37.64■■■■□ 3.62
SHROOM4Q9ULL8 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC37.64■■■■□ 3.62
SHROOM4Q9ULL8 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC37.64■■■■□ 3.62
SHROOM4Q9ULL8 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC37.64■■■■□ 3.62
SHROOM4Q9ULL8 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC37.64■■■■□ 3.62
SHROOM4Q9ULL8 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC37.64■■■■□ 3.62
SHROOM4Q9ULL8 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC37.63■■■■□ 3.62
SHROOM4Q9ULL8 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC37.63■■■■□ 3.62
SHROOM4Q9ULL8 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC37.63■■■■□ 3.62
SHROOM4Q9ULL8 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC37.63■■■■□ 3.61
SHROOM4Q9ULL8 AC007375.3-201ENST00000600936 2314 ntBASIC37.63■■■■□ 3.61
SHROOM4Q9ULL8 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC37.63■■■■□ 3.61
SHROOM4Q9ULL8 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC37.63■■■■□ 3.61
SHROOM4Q9ULL8 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC37.63■■■■□ 3.61
SHROOM4Q9ULL8 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC37.63■■■■□ 3.61
SHROOM4Q9ULL8 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC37.63■■■■□ 3.61
SHROOM4Q9ULL8 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC37.63■■■■□ 3.61
SHROOM4Q9ULL8 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC37.63■■■■□ 3.61
SHROOM4Q9ULL8 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC37.63■■■■□ 3.61
SHROOM4Q9ULL8 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC37.63■■■■□ 3.61
SHROOM4Q9ULL8 AC091390.4-202ENST00000476426 537 ntBASIC37.63■■■■□ 3.61
SHROOM4Q9ULL8 C1QL1P1-201ENST00000568105 661 ntBASIC37.63■■■■□ 3.61
SHROOM4Q9ULL8 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC37.63■■■■□ 3.61
SHROOM4Q9ULL8 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC37.62■■■■□ 3.61
SHROOM4Q9ULL8 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC37.62■■■■□ 3.61
SHROOM4Q9ULL8 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC37.62■■■■□ 3.61
SHROOM4Q9ULL8 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC37.62■■■■□ 3.61
SHROOM4Q9ULL8 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC37.62■■■■□ 3.61
SHROOM4Q9ULL8 AC026396.1-201ENST00000419388 421 ntBASIC37.62■■■■□ 3.61
SHROOM4Q9ULL8 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC37.62■■■■□ 3.61
SHROOM4Q9ULL8 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC37.62■■■■□ 3.61
SHROOM4Q9ULL8 CLN6-204ENST00000564752 900 ntTSL 3 BASIC37.62■■■■□ 3.61
SHROOM4Q9ULL8 AL121956.5-201ENST00000625261 221 ntBASIC37.62■■■■□ 3.61
SHROOM4Q9ULL8 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC37.62■■■■□ 3.61
SHROOM4Q9ULL8 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC37.62■■■■□ 3.61
SHROOM4Q9ULL8 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC37.62■■■■□ 3.61
SHROOM4Q9ULL8 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC37.62■■■■□ 3.61
SHROOM4Q9ULL8 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC37.61■■■■□ 3.61
SHROOM4Q9ULL8 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC37.61■■■■□ 3.61
SHROOM4Q9ULL8 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC37.61■■■■□ 3.61
SHROOM4Q9ULL8 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC37.61■■■■□ 3.61
SHROOM4Q9ULL8 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC37.61■■■■□ 3.61
SHROOM4Q9ULL8 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC37.61■■■■□ 3.61
SHROOM4Q9ULL8 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC37.61■■■■□ 3.61
SHROOM4Q9ULL8 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC37.61■■■■□ 3.61
SHROOM4Q9ULL8 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC37.61■■■■□ 3.61
SHROOM4Q9ULL8 CR392000.1-201ENST00000624770 1228 ntBASIC37.61■■■■□ 3.61
SHROOM4Q9ULL8 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC37.61■■■■□ 3.61
SHROOM4Q9ULL8 AC079834.2-201ENST00000609776 1949 ntBASIC37.61■■■■□ 3.61
SHROOM4Q9ULL8 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC37.61■■■■□ 3.61
SHROOM4Q9ULL8 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC37.61■■■■□ 3.61
SHROOM4Q9ULL8 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC37.61■■■■□ 3.61
SHROOM4Q9ULL8 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC37.61■■■■□ 3.61
SHROOM4Q9ULL8 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC37.61■■■■□ 3.61
SHROOM4Q9ULL8 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC37.61■■■■□ 3.61
SHROOM4Q9ULL8 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC37.61■■■■□ 3.61
SHROOM4Q9ULL8 AC007225.1-201ENST00000566331 1836 ntBASIC37.6■■■■□ 3.61
SHROOM4Q9ULL8 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC37.6■■■■□ 3.61
SHROOM4Q9ULL8 ECEL1P2-202ENST00000465689 757 ntBASIC37.6■■■■□ 3.61
SHROOM4Q9ULL8 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC37.6■■■■□ 3.61
SHROOM4Q9ULL8 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC37.6■■■■□ 3.61
SHROOM4Q9ULL8 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC37.6■■■■□ 3.61
SHROOM4Q9ULL8 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC37.6■■■■□ 3.61
SHROOM4Q9ULL8 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC37.6■■■■□ 3.61
SHROOM4Q9ULL8 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC37.6■■■■□ 3.61
SHROOM4Q9ULL8 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC37.59■■■■□ 3.61
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms