Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 AC092118.2-201ENST00000613495 667 ntBASIC18.94■□□□□ 0.62
VPS29Q9UBQ0 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS29Q9UBQ0 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS29Q9UBQ0 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS29Q9UBQ0 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC18.94■□□□□ 0.62
VPS29Q9UBQ0 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
VPS29Q9UBQ0 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.94■□□□□ 0.62
VPS29Q9UBQ0 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS29Q9UBQ0 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS29Q9UBQ0 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS29Q9UBQ0 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
VPS29Q9UBQ0 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.93■□□□□ 0.62
VPS29Q9UBQ0 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VPS29Q9UBQ0 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS29Q9UBQ0 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VPS29Q9UBQ0 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.93■□□□□ 0.62
VPS29Q9UBQ0 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.93■□□□□ 0.62
VPS29Q9UBQ0 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS29Q9UBQ0 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VPS29Q9UBQ0 SLC29A4P1-201ENST00000398760 971 ntBASIC18.93■□□□□ 0.62
VPS29Q9UBQ0 AL390719.1-204ENST00000412397 1219 ntBASIC18.93■□□□□ 0.62
VPS29Q9UBQ0 DUSP5P2-201ENST00000426873 1033 ntBASIC18.93■□□□□ 0.62
VPS29Q9UBQ0 NCF1B-203ENST00000435988 1254 ntBASIC18.93■□□□□ 0.62
VPS29Q9UBQ0 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
VPS29Q9UBQ0 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC18.93■□□□□ 0.62
VPS29Q9UBQ0 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS29Q9UBQ0 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS29Q9UBQ0 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS29Q9UBQ0 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.93■□□□□ 0.62
VPS29Q9UBQ0 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS29Q9UBQ0 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.93■□□□□ 0.62
VPS29Q9UBQ0 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS29Q9UBQ0 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS29Q9UBQ0 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VPS29Q9UBQ0 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS29Q9UBQ0 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS29Q9UBQ0 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VPS29Q9UBQ0 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS29Q9UBQ0 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.92■□□□□ 0.62
VPS29Q9UBQ0 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS29Q9UBQ0 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS29Q9UBQ0 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS29Q9UBQ0 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.92■□□□□ 0.62
VPS29Q9UBQ0 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VPS29Q9UBQ0 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS29Q9UBQ0 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS29Q9UBQ0 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.92■□□□□ 0.62
VPS29Q9UBQ0 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.92■□□□□ 0.62
VPS29Q9UBQ0 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS29Q9UBQ0 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC18.91■□□□□ 0.62
VPS29Q9UBQ0 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.91■□□□□ 0.62
VPS29Q9UBQ0 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS29Q9UBQ0 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
VPS29Q9UBQ0 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS29Q9UBQ0 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.91■□□□□ 0.62
VPS29Q9UBQ0 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
VPS29Q9UBQ0 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VPS29Q9UBQ0 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
VPS29Q9UBQ0 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.91■□□□□ 0.62
VPS29Q9UBQ0 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VPS29Q9UBQ0 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VPS29Q9UBQ0 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC18.91■□□□□ 0.62
VPS29Q9UBQ0 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC18.91■□□□□ 0.62
VPS29Q9UBQ0 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
VPS29Q9UBQ0 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC18.91■□□□□ 0.62
VPS29Q9UBQ0 TSPY6P-201ENST00000448518 926 ntBASIC18.91■□□□□ 0.62
VPS29Q9UBQ0 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.91■□□□□ 0.62
VPS29Q9UBQ0 WT1-AS_3.1-201ENST00000613262 234 ntBASIC18.91■□□□□ 0.62
VPS29Q9UBQ0 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.91■□□□□ 0.62
VPS29Q9UBQ0 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
VPS29Q9UBQ0 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
VPS29Q9UBQ0 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.91■□□□□ 0.62
VPS29Q9UBQ0 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VPS29Q9UBQ0 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 AC073210.2-201ENST00000430369 194 ntBASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 GUSBP6-202ENST00000438529 1198 ntBASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 AC091874.3-201ENST00000512672 1195 ntBASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 AC005829.2-201ENST00000571422 1056 ntBASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 AC093484.2-201ENST00000580996 2166 ntBASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS29Q9UBQ0 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms