Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LRFN1Q9P244 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
LRFN1Q9P244 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
LRFN1Q9P244 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC18.14■□□□□ 0.49
LRFN1Q9P244 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.14■□□□□ 0.49
LRFN1Q9P244 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.14■□□□□ 0.49
LRFN1Q9P244 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
LRFN1Q9P244 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.14■□□□□ 0.49
LRFN1Q9P244 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC18.14■□□□□ 0.49
LRFN1Q9P244 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.14■□□□□ 0.49
LRFN1Q9P244 CD177P1-201ENST00000606252 935 ntBASIC18.14■□□□□ 0.49
LRFN1Q9P244 AC073195.1-201ENST00000607241 877 ntBASIC18.14■□□□□ 0.49
LRFN1Q9P244 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.14■□□□□ 0.49
LRFN1Q9P244 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC18.14■□□□□ 0.49
LRFN1Q9P244 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LRFN1Q9P244 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
LRFN1Q9P244 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LRFN1Q9P244 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LRFN1Q9P244 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LRFN1Q9P244 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.14■□□□□ 0.49
LRFN1Q9P244 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LRFN1Q9P244 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC18.13■□□□□ 0.49
LRFN1Q9P244 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
LRFN1Q9P244 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC18.13■□□□□ 0.49
LRFN1Q9P244 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LRFN1Q9P244 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC18.13■□□□□ 0.49
LRFN1Q9P244 AL355355.2-201ENST00000442321 338 ntBASIC18.13■□□□□ 0.49
LRFN1Q9P244 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LRFN1Q9P244 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.13■□□□□ 0.49
LRFN1Q9P244 BX088651.1-201ENST00000540551 451 ntBASIC18.13■□□□□ 0.49
LRFN1Q9P244 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC18.13■□□□□ 0.49
LRFN1Q9P244 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
LRFN1Q9P244 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.13■□□□□ 0.49
LRFN1Q9P244 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
LRFN1Q9P244 AC026471.5-201ENST00000615068 467 ntBASIC18.13■□□□□ 0.49
LRFN1Q9P244 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC18.13■□□□□ 0.49
LRFN1Q9P244 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC18.13■□□□□ 0.49
LRFN1Q9P244 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
LRFN1Q9P244 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LRFN1Q9P244 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LRFN1Q9P244 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
LRFN1Q9P244 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LRFN1Q9P244 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.13■□□□□ 0.49
LRFN1Q9P244 AC018553.1-201ENST00000616682 1458 ntBASIC18.13■□□□□ 0.49
LRFN1Q9P244 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.12■□□□□ 0.49
LRFN1Q9P244 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LRFN1Q9P244 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LRFN1Q9P244 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
LRFN1Q9P244 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
LRFN1Q9P244 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LRFN1Q9P244 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LRFN1Q9P244 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LRFN1Q9P244 AL137060.1-201ENST00000618151 2648 ntBASIC18.12■□□□□ 0.49
LRFN1Q9P244 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
LRFN1Q9P244 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.12■□□□□ 0.49
LRFN1Q9P244 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC18.12■□□□□ 0.49
LRFN1Q9P244 FAM197Y1-201ENST00000421178 764 ntBASIC18.12■□□□□ 0.49
LRFN1Q9P244 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LRFN1Q9P244 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC18.12■□□□□ 0.49
LRFN1Q9P244 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC18.12■□□□□ 0.49
LRFN1Q9P244 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LRFN1Q9P244 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC18.12■□□□□ 0.49
LRFN1Q9P244 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC18.12■□□□□ 0.49
LRFN1Q9P244 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.12■□□□□ 0.49
LRFN1Q9P244 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LRFN1Q9P244 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LRFN1Q9P244 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.12■□□□□ 0.49
LRFN1Q9P244 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LRFN1Q9P244 PHGDH-210ENST00000641115 1638 ntBASIC18.12■□□□□ 0.49
LRFN1Q9P244 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LRFN1Q9P244 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LRFN1Q9P244 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
LRFN1Q9P244 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LRFN1Q9P244 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LRFN1Q9P244 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LRFN1Q9P244 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
LRFN1Q9P244 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
LRFN1Q9P244 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.11■□□□□ 0.49
LRFN1Q9P244 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.11■□□□□ 0.49
LRFN1Q9P244 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.11■□□□□ 0.49
LRFN1Q9P244 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
LRFN1Q9P244 TFP1-202ENST00000475455 1573 ntBASIC18.11■□□□□ 0.49
LRFN1Q9P244 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.11■□□□□ 0.49
LRFN1Q9P244 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.11■□□□□ 0.49
LRFN1Q9P244 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.11■□□□□ 0.49
LRFN1Q9P244 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LRFN1Q9P244 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LRFN1Q9P244 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC18.11■□□□□ 0.49
LRFN1Q9P244 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LRFN1Q9P244 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LRFN1Q9P244 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LRFN1Q9P244 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LRFN1Q9P244 SRI-203ENST00000419179 1307 ntTSL 2 BASIC18.1■□□□□ 0.49
LRFN1Q9P244 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LRFN1Q9P244 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LRFN1Q9P244 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC18.1■□□□□ 0.49
LRFN1Q9P244 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC18.1■□□□□ 0.49
LRFN1Q9P244 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LRFN1Q9P244 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC18.1■□□□□ 0.49
LRFN1Q9P244 AL355075.4-201ENST00000554988 638 ntBASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms