Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 PNN-205ENST00000556530 601 ntTSL 2 BASIC21.1■□□□□ 0.97
CISHQ9NSE2 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC21.1■□□□□ 0.97
CISHQ9NSE2 AC006058.3-201ENST00000606217 1069 ntBASIC21.1■□□□□ 0.97
CISHQ9NSE2 AC069544.1-201ENST00000609399 999 ntBASIC21.1■□□□□ 0.97
CISHQ9NSE2 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CISHQ9NSE2 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CISHQ9NSE2 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC21.1■□□□□ 0.97
CISHQ9NSE2 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
CISHQ9NSE2 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CISHQ9NSE2 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CISHQ9NSE2 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CISHQ9NSE2 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.09■□□□□ 0.97
CISHQ9NSE2 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CISHQ9NSE2 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
CISHQ9NSE2 AC125437.2-201ENST00000625180 2167 ntBASIC21.09■□□□□ 0.97
CISHQ9NSE2 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CISHQ9NSE2 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CISHQ9NSE2 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
CISHQ9NSE2 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC21.09■□□□□ 0.97
CISHQ9NSE2 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC21.09■□□□□ 0.97
CISHQ9NSE2 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
CISHQ9NSE2 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
CISHQ9NSE2 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CISHQ9NSE2 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CISHQ9NSE2 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CISHQ9NSE2 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CISHQ9NSE2 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC21.09■□□□□ 0.97
CISHQ9NSE2 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CISHQ9NSE2 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CISHQ9NSE2 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CISHQ9NSE2 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC21.09■□□□□ 0.97
CISHQ9NSE2 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CISHQ9NSE2 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CISHQ9NSE2 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC21.09■□□□□ 0.97
CISHQ9NSE2 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CISHQ9NSE2 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC21.08■□□□□ 0.97
CISHQ9NSE2 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CISHQ9NSE2 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
CISHQ9NSE2 SLC25A24-204ENST00000569674 2357 ntBASIC21.08■□□□□ 0.97
CISHQ9NSE2 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.08■□□□□ 0.97
CISHQ9NSE2 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
CISHQ9NSE2 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC21.08■□□□□ 0.97
CISHQ9NSE2 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
CISHQ9NSE2 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CISHQ9NSE2 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CISHQ9NSE2 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC21.08■□□□□ 0.97
CISHQ9NSE2 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
CISHQ9NSE2 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC21.08■□□□□ 0.97
CISHQ9NSE2 AC073648.6-201ENST00000641589 218 ntBASIC21.08■□□□□ 0.97
CISHQ9NSE2 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CISHQ9NSE2 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC21.08■□□□□ 0.96
CISHQ9NSE2 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CISHQ9NSE2 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CISHQ9NSE2 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CISHQ9NSE2 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CISHQ9NSE2 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC21.08■□□□□ 0.96
CISHQ9NSE2 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CISHQ9NSE2 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
CISHQ9NSE2 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CISHQ9NSE2 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CISHQ9NSE2 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CISHQ9NSE2 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC21.07■□□□□ 0.96
CISHQ9NSE2 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CISHQ9NSE2 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CISHQ9NSE2 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CISHQ9NSE2 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CISHQ9NSE2 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CISHQ9NSE2 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CISHQ9NSE2 FAM201B-201ENST00000458407 597 ntBASIC21.07■□□□□ 0.96
CISHQ9NSE2 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC21.07■□□□□ 0.96
CISHQ9NSE2 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CISHQ9NSE2 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CISHQ9NSE2 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CISHQ9NSE2 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC21.07■□□□□ 0.96
CISHQ9NSE2 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
CISHQ9NSE2 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
CISHQ9NSE2 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
CISHQ9NSE2 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CISHQ9NSE2 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC21.07■□□□□ 0.96
CISHQ9NSE2 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CISHQ9NSE2 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CISHQ9NSE2 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
CISHQ9NSE2 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CISHQ9NSE2 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CISHQ9NSE2 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CISHQ9NSE2 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC21.06■□□□□ 0.96
CISHQ9NSE2 AC128676.1-201ENST00000454392 318 ntBASIC21.06■□□□□ 0.96
CISHQ9NSE2 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CISHQ9NSE2 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC21.06■□□□□ 0.96
CISHQ9NSE2 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC21.06■□□□□ 0.96
CISHQ9NSE2 MTDHP1-201ENST00000605323 784 ntBASIC21.06■□□□□ 0.96
CISHQ9NSE2 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.06■□□□□ 0.96
CISHQ9NSE2 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CISHQ9NSE2 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC21.06■□□□□ 0.96
CISHQ9NSE2 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CISHQ9NSE2 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC21.06■□□□□ 0.96
CISHQ9NSE2 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CISHQ9NSE2 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CISHQ9NSE2 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
CISHQ9NSE2 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms