Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.61■□□□□ 0.73
SSU72Q9NP77 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SSU72Q9NP77 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.61■□□□□ 0.73
SSU72Q9NP77 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.61■□□□□ 0.73
SSU72Q9NP77 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.61■□□□□ 0.73
SSU72Q9NP77 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC19.61■□□□□ 0.73
SSU72Q9NP77 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC19.61■□□□□ 0.73
SSU72Q9NP77 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.61■□□□□ 0.73
SSU72Q9NP77 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.61■□□□□ 0.73
SSU72Q9NP77 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SSU72Q9NP77 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SSU72Q9NP77 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
SSU72Q9NP77 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SSU72Q9NP77 AL161938.1-201ENST00000569833 2180 ntBASIC19.61■□□□□ 0.73
SSU72Q9NP77 LETM1P2-201ENST00000597330 2178 ntBASIC19.61■□□□□ 0.73
SSU72Q9NP77 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC19.61■□□□□ 0.73
SSU72Q9NP77 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SSU72Q9NP77 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.61■□□□□ 0.73
SSU72Q9NP77 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SSU72Q9NP77 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SSU72Q9NP77 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SSU72Q9NP77 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SSU72Q9NP77 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
SSU72Q9NP77 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SSU72Q9NP77 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SSU72Q9NP77 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
SSU72Q9NP77 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SSU72Q9NP77 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SSU72Q9NP77 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SSU72Q9NP77 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
SSU72Q9NP77 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19.6■□□□□ 0.73
SSU72Q9NP77 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SSU72Q9NP77 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
SSU72Q9NP77 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC19.6■□□□□ 0.73
SSU72Q9NP77 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SSU72Q9NP77 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.6■□□□□ 0.73
SSU72Q9NP77 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
SSU72Q9NP77 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.6■□□□□ 0.73
SSU72Q9NP77 AC131212.1-201ENST00000613771 668 ntBASIC19.6■□□□□ 0.73
SSU72Q9NP77 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
SSU72Q9NP77 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC19.6■□□□□ 0.73
SSU72Q9NP77 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.6■□□□□ 0.73
SSU72Q9NP77 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.6■□□□□ 0.73
SSU72Q9NP77 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.6■□□□□ 0.73
SSU72Q9NP77 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
SSU72Q9NP77 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
SSU72Q9NP77 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.59■□□□□ 0.73
SSU72Q9NP77 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SSU72Q9NP77 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SSU72Q9NP77 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SSU72Q9NP77 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SSU72Q9NP77 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC19.59■□□□□ 0.73
SSU72Q9NP77 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC19.59■□□□□ 0.73
SSU72Q9NP77 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SSU72Q9NP77 HLA-G-202ENST00000376815 851 ntBASIC19.59■□□□□ 0.73
SSU72Q9NP77 HLA-G-203ENST00000376818 1127 ntBASIC19.59■□□□□ 0.73
SSU72Q9NP77 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.59■□□□□ 0.73
SSU72Q9NP77 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.59■□□□□ 0.73
SSU72Q9NP77 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SSU72Q9NP77 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SSU72Q9NP77 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SSU72Q9NP77 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
SSU72Q9NP77 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SSU72Q9NP77 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SSU72Q9NP77 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SSU72Q9NP77 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SSU72Q9NP77 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.59■□□□□ 0.73
SSU72Q9NP77 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SSU72Q9NP77 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC19.59■□□□□ 0.73
SSU72Q9NP77 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SSU72Q9NP77 AC004854.2-201ENST00000608450 1441 ntBASIC19.59■□□□□ 0.73
SSU72Q9NP77 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SSU72Q9NP77 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
SSU72Q9NP77 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SSU72Q9NP77 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.73
SSU72Q9NP77 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.58■□□□□ 0.73
SSU72Q9NP77 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
SSU72Q9NP77 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SSU72Q9NP77 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.73
SSU72Q9NP77 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SSU72Q9NP77 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SSU72Q9NP77 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SSU72Q9NP77 AK1-201ENST00000223836 736 ntTSL 3 BASIC19.58■□□□□ 0.72
SSU72Q9NP77 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SSU72Q9NP77 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SSU72Q9NP77 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC19.58■□□□□ 0.72
SSU72Q9NP77 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.58■□□□□ 0.72
SSU72Q9NP77 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
SSU72Q9NP77 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
SSU72Q9NP77 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
SSU72Q9NP77 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SSU72Q9NP77 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SSU72Q9NP77 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SSU72Q9NP77 AC006333.2-201ENST00000607957 2099 ntBASIC19.58■□□□□ 0.72
SSU72Q9NP77 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC19.58■□□□□ 0.72
SSU72Q9NP77 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SSU72Q9NP77 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SSU72Q9NP77 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
SSU72Q9NP77 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
SSU72Q9NP77 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms