Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 EGLN1P1-201ENST00000531623 762 ntBASIC25.18■■□□□ 1.62
USP42Q9H9J4 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC25.18■■□□□ 1.62
USP42Q9H9J4 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
USP42Q9H9J4 GRAMD4P8-201ENST00000605465 1115 ntBASIC25.18■■□□□ 1.62
USP42Q9H9J4 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
USP42Q9H9J4 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
USP42Q9H9J4 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC25.17■■□□□ 1.62
USP42Q9H9J4 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC25.17■■□□□ 1.62
USP42Q9H9J4 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC25.17■■□□□ 1.62
USP42Q9H9J4 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC25.17■■□□□ 1.62
USP42Q9H9J4 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
USP42Q9H9J4 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC25.17■■□□□ 1.62
USP42Q9H9J4 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
USP42Q9H9J4 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
USP42Q9H9J4 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC25.17■■□□□ 1.62
USP42Q9H9J4 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC25.17■■□□□ 1.62
USP42Q9H9J4 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
USP42Q9H9J4 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC25.17■■□□□ 1.62
USP42Q9H9J4 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC25.17■■□□□ 1.62
USP42Q9H9J4 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
USP42Q9H9J4 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC25.16■■□□□ 1.62
USP42Q9H9J4 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
USP42Q9H9J4 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC25.16■■□□□ 1.62
USP42Q9H9J4 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
USP42Q9H9J4 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
USP42Q9H9J4 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC25.16■■□□□ 1.62
USP42Q9H9J4 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC25.16■■□□□ 1.62
USP42Q9H9J4 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC25.16■■□□□ 1.62
USP42Q9H9J4 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
USP42Q9H9J4 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
USP42Q9H9J4 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
USP42Q9H9J4 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
USP42Q9H9J4 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
USP42Q9H9J4 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC25.16■■□□□ 1.62
USP42Q9H9J4 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC25.16■■□□□ 1.62
USP42Q9H9J4 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
USP42Q9H9J4 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC25.16■■□□□ 1.62
USP42Q9H9J4 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
USP42Q9H9J4 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC25.15■■□□□ 1.62
USP42Q9H9J4 GUK1-204ENST00000366721 689 ntTSL 3 BASIC25.15■■□□□ 1.62
USP42Q9H9J4 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC25.15■■□□□ 1.62
USP42Q9H9J4 LIN28AP1-201ENST00000429574 405 ntBASIC25.15■■□□□ 1.62
USP42Q9H9J4 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
USP42Q9H9J4 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
USP42Q9H9J4 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC25.15■■□□□ 1.62
USP42Q9H9J4 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
USP42Q9H9J4 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC25.15■■□□□ 1.62
USP42Q9H9J4 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC25.15■■□□□ 1.62
USP42Q9H9J4 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC25.15■■□□□ 1.62
USP42Q9H9J4 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC25.14■■□□□ 1.62
USP42Q9H9J4 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC25.14■■□□□ 1.62
USP42Q9H9J4 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
USP42Q9H9J4 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC25.14■■□□□ 1.62
USP42Q9H9J4 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.62
USP42Q9H9J4 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.62
USP42Q9H9J4 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC25.14■■□□□ 1.62
USP42Q9H9J4 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC25.14■■□□□ 1.62
USP42Q9H9J4 AC011506.1-201ENST00000474329 610 ntBASIC25.14■■□□□ 1.62
USP42Q9H9J4 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC25.14■■□□□ 1.62
USP42Q9H9J4 FAM87A-204ENST00000613235 858 ntBASIC25.14■■□□□ 1.62
USP42Q9H9J4 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC25.14■■□□□ 1.62
USP42Q9H9J4 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.62
USP42Q9H9J4 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC25.14■■□□□ 1.62
USP42Q9H9J4 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC25.14■■□□□ 1.61
USP42Q9H9J4 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC25.14■■□□□ 1.61
USP42Q9H9J4 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
USP42Q9H9J4 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC25.14■■□□□ 1.61
USP42Q9H9J4 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.61
USP42Q9H9J4 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC25.14■■□□□ 1.61
USP42Q9H9J4 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC25.13■■□□□ 1.61
USP42Q9H9J4 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
USP42Q9H9J4 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
USP42Q9H9J4 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC25.13■■□□□ 1.61
USP42Q9H9J4 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC25.13■■□□□ 1.61
USP42Q9H9J4 ATP5G1P1-201ENST00000448724 379 ntBASIC25.13■■□□□ 1.61
USP42Q9H9J4 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC25.13■■□□□ 1.61
USP42Q9H9J4 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
USP42Q9H9J4 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC25.13■■□□□ 1.61
USP42Q9H9J4 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC25.13■■□□□ 1.61
USP42Q9H9J4 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
USP42Q9H9J4 H19-201ENST00000411754 1788 ntTSL 5 BASIC25.13■■□□□ 1.61
USP42Q9H9J4 AC007225.1-201ENST00000566331 1836 ntBASIC25.13■■□□□ 1.61
USP42Q9H9J4 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
USP42Q9H9J4 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC25.13■■□□□ 1.61
USP42Q9H9J4 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC25.13■■□□□ 1.61
USP42Q9H9J4 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC25.13■■□□□ 1.61
USP42Q9H9J4 AP006587.1-201ENST00000534129 1502 ntBASIC25.13■■□□□ 1.61
USP42Q9H9J4 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
USP42Q9H9J4 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
USP42Q9H9J4 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
USP42Q9H9J4 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
USP42Q9H9J4 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC25.12■■□□□ 1.61
USP42Q9H9J4 AC004980.1-204ENST00000429707 299 ntBASIC25.12■■□□□ 1.61
USP42Q9H9J4 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC25.12■■□□□ 1.61
USP42Q9H9J4 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC25.12■■□□□ 1.61
USP42Q9H9J4 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
USP42Q9H9J4 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC25.12■■□□□ 1.61
USP42Q9H9J4 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
USP42Q9H9J4 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
USP42Q9H9J4 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms