Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
MMP28Q9H239 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC17.37■□□□□ 0.37
MMP28Q9H239 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
MMP28Q9H239 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MMP28Q9H239 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MMP28Q9H239 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MMP28Q9H239 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MMP28Q9H239 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MMP28Q9H239 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC17.37■□□□□ 0.37
MMP28Q9H239 TPRG1LP1-201ENST00000598702 760 ntBASIC17.37■□□□□ 0.37
MMP28Q9H239 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MMP28Q9H239 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
MMP28Q9H239 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
MMP28Q9H239 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MMP28Q9H239 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
MMP28Q9H239 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MMP28Q9H239 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
MMP28Q9H239 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MMP28Q9H239 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MMP28Q9H239 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MMP28Q9H239 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MMP28Q9H239 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
MMP28Q9H239 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MMP28Q9H239 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
MMP28Q9H239 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
MMP28Q9H239 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC17.36■□□□□ 0.37
MMP28Q9H239 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
MMP28Q9H239 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
MMP28Q9H239 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
MMP28Q9H239 FXN-202ENST00000396364 980 ntTSL 5 BASIC17.36■□□□□ 0.37
MMP28Q9H239 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC17.36■□□□□ 0.37
MMP28Q9H239 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC17.36■□□□□ 0.37
MMP28Q9H239 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
MMP28Q9H239 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC17.36■□□□□ 0.37
MMP28Q9H239 AC055733.4-201ENST00000638462 1354 ntBASIC17.36■□□□□ 0.37
MMP28Q9H239 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
MMP28Q9H239 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC17.36■□□□□ 0.37
MMP28Q9H239 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
MMP28Q9H239 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC17.36■□□□□ 0.37
MMP28Q9H239 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC17.36■□□□□ 0.37
MMP28Q9H239 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
MMP28Q9H239 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
MMP28Q9H239 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
MMP28Q9H239 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
MMP28Q9H239 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
MMP28Q9H239 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
MMP28Q9H239 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
MMP28Q9H239 AC009113.1-201ENST00000570267 2443 ntBASIC17.35■□□□□ 0.37
MMP28Q9H239 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
MMP28Q9H239 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC17.35■□□□□ 0.37
MMP28Q9H239 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC17.35■□□□□ 0.37
MMP28Q9H239 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
MMP28Q9H239 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
MMP28Q9H239 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
MMP28Q9H239 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
MMP28Q9H239 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
MMP28Q9H239 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
MMP28Q9H239 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
MMP28Q9H239 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.35■□□□□ 0.37
MMP28Q9H239 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
MMP28Q9H239 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC17.35■□□□□ 0.37
MMP28Q9H239 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
MMP28Q9H239 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
MMP28Q9H239 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
MMP28Q9H239 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
MMP28Q9H239 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
MMP28Q9H239 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.35■□□□□ 0.37
MMP28Q9H239 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
MMP28Q9H239 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.34■□□□□ 0.37
MMP28Q9H239 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
MMP28Q9H239 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MMP28Q9H239 AC106820.2-201ENST00000563775 3264 ntBASIC17.34■□□□□ 0.37
MMP28Q9H239 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.34■□□□□ 0.37
MMP28Q9H239 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MMP28Q9H239 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MMP28Q9H239 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
MMP28Q9H239 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MMP28Q9H239 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MMP28Q9H239 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
MMP28Q9H239 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MMP28Q9H239 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
MMP28Q9H239 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
MMP28Q9H239 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
MMP28Q9H239 AC011484.1-201ENST00000377652 1995 ntBASIC17.34■□□□□ 0.37
MMP28Q9H239 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MMP28Q9H239 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC17.34■□□□□ 0.37
MMP28Q9H239 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC17.34■□□□□ 0.37
MMP28Q9H239 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
MMP28Q9H239 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.34■□□□□ 0.37
MMP28Q9H239 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC17.34■□□□□ 0.37
MMP28Q9H239 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC17.34■□□□□ 0.37
MMP28Q9H239 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC17.34■□□□□ 0.37
MMP28Q9H239 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MMP28Q9H239 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
MMP28Q9H239 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MMP28Q9H239 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
MMP28Q9H239 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
MMP28Q9H239 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
MMP28Q9H239 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
MMP28Q9H239 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms