Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC18.26■□□□□ 0.51
ZNF540Q8NDQ6 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC18.26■□□□□ 0.51
ZNF540Q8NDQ6 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC18.26■□□□□ 0.51
ZNF540Q8NDQ6 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC18.26■□□□□ 0.51
ZNF540Q8NDQ6 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC18.26■□□□□ 0.51
ZNF540Q8NDQ6 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC18.26■□□□□ 0.51
ZNF540Q8NDQ6 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC18.26■□□□□ 0.51
ZNF540Q8NDQ6 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
ZNF540Q8NDQ6 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ZNF540Q8NDQ6 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
ZNF540Q8NDQ6 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ZNF540Q8NDQ6 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
ZNF540Q8NDQ6 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.25■□□□□ 0.51
ZNF540Q8NDQ6 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.25■□□□□ 0.51
ZNF540Q8NDQ6 DPP3P2-201ENST00000416030 1696 ntBASIC18.25■□□□□ 0.51
ZNF540Q8NDQ6 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
ZNF540Q8NDQ6 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
ZNF540Q8NDQ6 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
ZNF540Q8NDQ6 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC18.25■□□□□ 0.51
ZNF540Q8NDQ6 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC18.25■□□□□ 0.51
ZNF540Q8NDQ6 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
ZNF540Q8NDQ6 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
ZNF540Q8NDQ6 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
ZNF540Q8NDQ6 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
ZNF540Q8NDQ6 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
ZNF540Q8NDQ6 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
ZNF540Q8NDQ6 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
ZNF540Q8NDQ6 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
ZNF540Q8NDQ6 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.24■□□□□ 0.51
ZNF540Q8NDQ6 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
ZNF540Q8NDQ6 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
ZNF540Q8NDQ6 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
ZNF540Q8NDQ6 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
ZNF540Q8NDQ6 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
ZNF540Q8NDQ6 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
ZNF540Q8NDQ6 ME3-201ENST00000323418 1068 ntTSL 5 BASIC18.24■□□□□ 0.51
ZNF540Q8NDQ6 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
ZNF540Q8NDQ6 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC18.24■□□□□ 0.51
ZNF540Q8NDQ6 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC18.24■□□□□ 0.51
ZNF540Q8NDQ6 KRT18P11-201ENST00000435214 1283 ntBASIC18.24■□□□□ 0.51
ZNF540Q8NDQ6 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC18.24■□□□□ 0.51
ZNF540Q8NDQ6 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC18.24■□□□□ 0.51
ZNF540Q8NDQ6 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC18.24■□□□□ 0.51
ZNF540Q8NDQ6 AC053503.5-201ENST00000601508 636 ntBASIC18.24■□□□□ 0.51
ZNF540Q8NDQ6 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC18.24■□□□□ 0.51
ZNF540Q8NDQ6 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
ZNF540Q8NDQ6 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
ZNF540Q8NDQ6 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
ZNF540Q8NDQ6 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
ZNF540Q8NDQ6 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.24■□□□□ 0.51
ZNF540Q8NDQ6 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
ZNF540Q8NDQ6 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
ZNF540Q8NDQ6 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.24■□□□□ 0.51
ZNF540Q8NDQ6 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 AC005082.1-201ENST00000413042 2259 ntBASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 BX119927.1-201ENST00000636596 1552 ntBASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 AC006015.1-201ENST00000429970 570 ntBASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 EEF1DP3-203ENST00000566025 782 ntBASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 CPT2-209ENST00000636935 803 ntTSL 5 BASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
ZNF540Q8NDQ6 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.22■□□□□ 0.51
ZNF540Q8NDQ6 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
ZNF540Q8NDQ6 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ZNF540Q8NDQ6 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC18.22■□□□□ 0.51
ZNF540Q8NDQ6 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ZNF540Q8NDQ6 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
ZNF540Q8NDQ6 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
ZNF540Q8NDQ6 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.22■□□□□ 0.51
ZNF540Q8NDQ6 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ZNF540Q8NDQ6 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms