Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CCDC65Q8IXS2 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CCDC65Q8IXS2 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC21.94■■□□□ 1.1
CCDC65Q8IXS2 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC21.94■■□□□ 1.1
CCDC65Q8IXS2 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
CCDC65Q8IXS2 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC21.94■■□□□ 1.1
CCDC65Q8IXS2 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC65Q8IXS2 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC65Q8IXS2 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC65Q8IXS2 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
CCDC65Q8IXS2 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC21.93■■□□□ 1.1
CCDC65Q8IXS2 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC65Q8IXS2 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC21.93■■□□□ 1.1
CCDC65Q8IXS2 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
CCDC65Q8IXS2 ABHD17AP6-201ENST00000458502 1044 ntBASIC21.93■■□□□ 1.1
CCDC65Q8IXS2 RPS2P52-201ENST00000469610 820 ntBASIC21.93■■□□□ 1.1
CCDC65Q8IXS2 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC21.93■■□□□ 1.1
CCDC65Q8IXS2 KLF13-207ENST00000560473 489 ntTSL 3 BASIC21.93■■□□□ 1.1
CCDC65Q8IXS2 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC21.93■■□□□ 1.1
CCDC65Q8IXS2 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC21.93■■□□□ 1.1
CCDC65Q8IXS2 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC21.93■■□□□ 1.1
CCDC65Q8IXS2 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC21.93■■□□□ 1.1
CCDC65Q8IXS2 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC65Q8IXS2 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC65Q8IXS2 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC65Q8IXS2 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC65Q8IXS2 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC65Q8IXS2 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC65Q8IXS2 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC21.92■■□□□ 1.1
CCDC65Q8IXS2 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC21.92■■□□□ 1.1
CCDC65Q8IXS2 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC21.92■■□□□ 1.1
CCDC65Q8IXS2 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC65Q8IXS2 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC65Q8IXS2 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
CCDC65Q8IXS2 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC65Q8IXS2 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC65Q8IXS2 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC21.92■■□□□ 1.1
CCDC65Q8IXS2 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC21.92■■□□□ 1.1
CCDC65Q8IXS2 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC21.92■■□□□ 1.1
CCDC65Q8IXS2 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC65Q8IXS2 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC65Q8IXS2 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC65Q8IXS2 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC21.92■■□□□ 1.1
CCDC65Q8IXS2 STX6-204ENST00000542060 4809 ntTSL 2 BASIC21.92■■□□□ 1.1
CCDC65Q8IXS2 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC65Q8IXS2 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
CCDC65Q8IXS2 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
CCDC65Q8IXS2 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
CCDC65Q8IXS2 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC65Q8IXS2 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC65Q8IXS2 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC65Q8IXS2 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC65Q8IXS2 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
CCDC65Q8IXS2 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC21.91■■□□□ 1.1
CCDC65Q8IXS2 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC65Q8IXS2 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC21.91■■□□□ 1.1
CCDC65Q8IXS2 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC21.91■■□□□ 1.1
CCDC65Q8IXS2 SOX15-203ENST00000570788 1093 ntBASIC21.91■■□□□ 1.1
CCDC65Q8IXS2 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC65Q8IXS2 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC65Q8IXS2 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC65Q8IXS2 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC65Q8IXS2 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC65Q8IXS2 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC65Q8IXS2 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC65Q8IXS2 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
CCDC65Q8IXS2 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC21.9■■□□□ 1.1
CCDC65Q8IXS2 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
CCDC65Q8IXS2 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC65Q8IXS2 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC21.9■■□□□ 1.1
CCDC65Q8IXS2 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC65Q8IXS2 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC65Q8IXS2 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
CCDC65Q8IXS2 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC21.9■■□□□ 1.1
CCDC65Q8IXS2 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC21.9■■□□□ 1.1
CCDC65Q8IXS2 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC65Q8IXS2 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC65Q8IXS2 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC21.9■■□□□ 1.1
CCDC65Q8IXS2 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC21.9■■□□□ 1.1
CCDC65Q8IXS2 AC120498.8-201ENST00000614275 531 ntBASIC21.9■■□□□ 1.1
CCDC65Q8IXS2 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC65Q8IXS2 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
CCDC65Q8IXS2 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC65Q8IXS2 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC65Q8IXS2 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC65Q8IXS2 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC21.9■■□□□ 1.1
CCDC65Q8IXS2 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC21.9■■□□□ 1.1
CCDC65Q8IXS2 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC21.9■■□□□ 1.1
CCDC65Q8IXS2 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC21.9■■□□□ 1.1
CCDC65Q8IXS2 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC65Q8IXS2 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC65Q8IXS2 AC124283.5-201ENST00000624661 1809 ntBASIC21.9■■□□□ 1.1
CCDC65Q8IXS2 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC21.89■■□□□ 1.1
CCDC65Q8IXS2 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC21.89■■□□□ 1.1
CCDC65Q8IXS2 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC21.89■■□□□ 1.1
CCDC65Q8IXS2 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
CCDC65Q8IXS2 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC21.89■■□□□ 1.1
CCDC65Q8IXS2 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CCDC65Q8IXS2 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC21.89■■□□□ 1.09
CCDC65Q8IXS2 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms